Harnessing Adversarial Distillation to Customise Debiased, Disease-Specific Pathology Foundation Models for Breast Cancer
利用对抗蒸馏定制去偏差的、针对乳腺癌的疾病专用病理学基础模型
Zhiwei Chen, Yang Hu, Yuxiang Xiao, Yakun Ju, Tianyang Zhang, Yingxue Xu, Wei Li, Hao Chen, Jens Rittscher, Kaixiang Yang
机构
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School of Computer Science and Engineering, South China University of Technology(华南理工大学计算机科学与工程学院)
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School of Computing and Mathematical Sciences, University of Leicester(莱斯特大学计算与数学科学学院)
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Leicester Cancer Research Centre, University of Leicester(莱斯特大学莱斯特癌症研究中心)
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Department of Engineering Science, University of Oxford(牛津大学工程科学系)
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Nuffield Department of Medicine, University of Oxford(牛津大学纳菲尔德医学院)
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Department of Computer Science and Engineering, The Hong Kong University of Science and Technology(香港科技大学计算机科学与工程学系)
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ZoyMed(佐医医疗(ZoyMed))
Weakly Supervised Pathology-Informed Representation Learning for PET-Based Content Retrieval of Intra-Tumour Heterogeneity
用于基于PET的肿瘤内异质性内容检索的弱监督病理信息表征学习
Rajat Vashistha, Sandra Brosda, Lauren G. Aoude, Christine Jestin Hannan, James M. Lonie, Jessica Ng, Andrew Nathanson, Ellie Vloedmans, Caroline Cooper, Andrew P. Barbour, Viktor Vegh
Democratizing and accelerating AI-driven pathology research through agentic intelligence
通过智能体智能实现AI驱动病理学研究的民主化与加速
Jiabo Ma, Cheng Jin, Yihui Wang, Hao Jiang, Ling Liang, Yingxue Xu, Junlin Hou, Zhengrui Guo, Zhengyu Zhang, Yifei Xia, Hongyi Wang, Fengtao Zhou, Zhe Xu, Huajun Zhou, Jiarui Ouyang, Qian Zeng, On Ki Tang, Eunhyang Park, Carolyn Glass, Ronald Cheong Kin Chan, Li Liang, Hao Chen
机构
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Hong Kong University of Science and Technology(香港科技大学)
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Southern Medical University(南方医科大学)
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Nanfang Hospital(南方医院)
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Guangdong Province Key Laboratory of Molecular Tumor Pathology(广东省分子肿瘤病理重点实验室)
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Jinfeng Laboratory(金凤实验室)
机构
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Division of Computational Pathology, Department of Pathology and Laboratory Medicine, Indiana University School of Medicine(计算病理学部,病理学与实验室医学部,印第安纳大学医学院)
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IU Melvin and Bren Simon Comprehensive Cancer Center(印第安纳大学Melvin和Bren Simon综合癌症中心)
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Departments of Biostatistics and Health Data Science(生物统计学与健康数据科学部)
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Radiology and Imaging Sciences(放射学与影像科学部)
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Neurological Surgery(神经外科)
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Indiana University School of Medicine(印第安纳大学医学院)
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Department of Computer Science, Luddy School of Informatics, Computing, and Engineering(计算机科学部,Luddy信息、计算与工程学院)
In-Domain Supervised Pathology Report Classification: A Reproducible Pipeline from Data Curation to Production-Matched Evaluation
领域内监督病理报告分类:从数据整理到生产匹配评估的可复现流程
Isaac Hands, Bin Huang, Adam Spannaus, John Gounley, Heidi Hanson, Eric Durbin, Sally R. Ellingson
机构
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University of Kentucky(肯塔基大学)
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UK Markey Cancer Center(肯塔基大学马基癌症中心)
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Kentucky Cancer Registry(肯塔基癌症登记处)
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Division of Cancer Biostatistics, University of Kentucky(肯塔基大学癌症生物统计学系)
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Oak Ridge National Laboratory(橡树岭国家实验室)
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Division of Biomedical Informatics, University of Kentucky(肯塔基大学生物医学信息学系)
A Multi-modal Agentic Co-pilot for Evidence Grounded Computational Pathology
面向证据基础计算病理学的多模态智能体协同助手
Zhe Xu, Zhengyu Zhang, Zhiyuan Cai, Jiahao Xu, Yijie Lin, Ziyi Liu, Junlin Hou, Hongyi Wang, Yuxiang Nie, Ling Liang, Yihui Wang, Yingxue Xu, Ronald Cheong Kin Chan, Li Liang, Hao Chen
机构
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Department of Computer Science and Engineering, Hong Kong University of Science and Technology(香港科技大学计算机科学与工程系)
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Department of Pathology, Nanfang Hospital, Southern Medical University(南方医科大学南芳医院病理科)
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Department of Pathology, School of Basic Medical Sciences, Southern Medical University(南方医科大学基础医学学院病理科)
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Department of Anatomical and Cellular Pathology, Chinese University of Hong Kong(香港中文大学解剖与细胞病理学系)
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Guangdong Provincial Key Laboratory of Molecular Tumor Pathology(广东省分子肿瘤病理学重点实验室)
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Jinfeng Laboratory(锦风实验室)
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Department of Chemical and Biological Engineering, Hong Kong University of Science and Technology(香港科技大学化学与生物工程系)
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Division of Life Science, Hong Kong University of Science and Technology(香港科技大学生命科学系)
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State Key Laboratory of Nervous System Disorders, The Hong Kong University of Science and Technology(香港科技大学神经系统疾病国家重点实验室)
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HKUST Shenzhen-Hong Kong Collaborative Innovation Research Institute, The Hong Kong University of Science and Technology(香港科技大学深圳-香港协同创新研究院)
Prompt, Plan, Extract: Zero-Shot Agentic LLMs Workflows for Lung Pathology Extraction from Clinical Narratives
提示、规划、提取:用于从临床叙述中提取肺部病理学的零样本智能体LLM工作流
Aman Pathak, Cheng Peng, Mengxian Lyu, Ziyi Chen, Reema Solan, Sankalp Talankar, Yasir Khan, Hiren Mehta, Aokun Chen, Yi Guo, Yonghui Wu
机构
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Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida(健康结果与生物医学信息学系,医学院,佛罗里达大学)
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Division of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, College of Medicine, University of Florida(呼吸科、重症医学科和睡眠医学科,医学系,医学院,佛罗里达大学)
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College of Nursing, Florida State University(护理学院,佛罗里达州立大学)
Comments7 pages, 2 figures, 3 tables. Affiliations: (1) Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA (2) Division of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, College of Medicine, University of Florida, Gainesville, FL, USA (3) College of Nursing, Florida State University, Tallahassee, FL, USA
Comments40 pages, 7 figures, 10 tables. Supplementary Information (16 pages) included as an ancillary file. Segmentation outputs obtained under the Aignostics Research Access Programme; OpenTME data at https://huggingface.co/datasets/Aignostics/OpenTME
机构
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College of Computer Science and Technology, Harbin Institute of Technology, Shenzhen(哈尔滨工业大学(深圳)计算机科学与技术学院)
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School of Computing and Data Science, The University of Hong Kong(香港大学计算与数据科学学院)
Understanding Synergistic Interactions among Pathology Foundation Models via Adaptive Fusion
通过自适应融合理解病理基础模型间的协同交互作用
Yuxiang Xiao, Yang Hu, Bin Li, Tianyang Zhang, Zexi Li, Huazhu Fu, Jens Rittscher, Kaixiang Yang
机构
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School of Computer Science and Engineering, South China University of Technology(华南理工大学计算机科学与工程学院)
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School of Computing and Mathematical Sciences, University of Leicester(莱斯特大学计算与数学科学学院)
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Leicester Cancer Research Centre, University of Leicester(莱斯特大学莱斯特癌症研究中心)
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Department of Engineering Science, University of Oxford(牛津大学工程科学系)
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Nuffield Department of Medicine, University of Oxford(牛津大学纳菲尔德医学院)
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A*STAR, Singapore(新加坡科技研究局)
Beyond Classification: Pathology Foundation Models as Detection Encoders for Mitotic Figures
超越分类:病理学基础模型作为有丝分裂图的检测编码器
Sweta Banerjee, Alireza Teimoury, Nils Porsche, Alexandra K. Stoll, Viktoria Weiss, Niklas Hargarter, Jonas Ammeling, Thomas Conrad, Christoph Stroblberger, Christopher Kaltnecker, Robert Klopfleisch, Christof A. Bertram, Katharina Breininger, Marc Aubreville
机构
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Flensburg University of Applied Sciences(弗伦斯堡应用科学大学)
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University of Veterinary Medicine, Vienna(维也纳兽医大学)
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Freie Universität Berlin(柏林自由大学)
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Technische Hochschule Ingolstadt(英戈尔施塔特应用技术大学)
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Medical University of Vienna(维也纳医科大学)
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Julius-Maximilians-Universität Würzburg(维尔zburg大学)
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Friedrich-Alexander-Universität Erlangen-Nürnberg(埃尔朗根-纽伦堡弗里德里希-亚历山大大学)
Robustifying pathology foundation models via fine-tuning
通过微调增强病理学基础模型的鲁棒性
Alexandre Filiot, Oskar Thaeter, Benoit Schmauch, Lionel Guillou
机构
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Waiv
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Institute of Pathology, Technical University of Munich(慕尼黑工业大学病理学研究所)
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School of Computation, Information and Technology, Technical University of Munich(慕尼黑工业大学计算、信息与技术学院)
机构
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Tsinghua Shenzhen International Graduate School, Tsinghua University(清华大学深圳国际研究生院)
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University of Washington(华盛顿大学)
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City University of Hong Kong (Dongguan)(香港城市大学(东莞))
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Medical Optical Technology R&D Center, Research Institute of Tsinghua(清华研究院医学光学技术研发中心)
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Jinfeng Laboratory(金凤实验室)
Multi-Teacher Contrastive Distillation for Edge-Efficient Pathology Foundation Models
用于边缘高效病理学基础模型的多教师对比蒸馏
Tim Lenz, Maurice Heide, Marco Gustav, Nic G. Reitsam, Jakob Nikolas Kather
机构
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EKFZ for Digital Health(数字健康EKFZ)
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TU Dresden(德累斯顿工业大学)
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University of Augsburg(奥格斯堡大学)
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Bavarian Cancer Research Center (BZKF)(巴伐利亚癌症研究中心)
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Department of Medicine I, TU Dresden(德累斯顿工业大学第一医学院)
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NCT Heidelberg(海德堡NCT)
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University of Leeds(利兹大学)
Prior-Anchored Debiasing for Long-Tailed Multi-Organ Pathology Report Generation
先验锚定去偏方法用于长尾多器官病理报告生成
Feng Yang, Jie Liu, Yubo Pang, Peilin Chen, Xinheng Lyu, Shiqi Wang, Howard Leung, Ping Chen
机构
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City University of Hong Kong, Hong Kong SAR(香港城市大学)
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University of Nottingham, United Kingdom(诺丁汉大学)
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University of Massachusetts Boston, United States(马萨诸塞大学波士顿分校)
Predicting Immune Biomarkers with MultiModal Mixture-of-Expert Pathology Foundation Models Empowers Precision Oncology
使用多模态混合专家病理基础模型预测免疫生物标志物,赋能精准肿瘤学
Tianyu Liu, Ziqing Wang, Zhaokang Liang, Tong Ding, Peter Humphrey, Lorraine Colón-Cartagena, Emily Ling-Lin Pai, Kenneth Tou En Chang, Mohamed Kahila, Jonathan Chong Kai Liew, Tinglin Huang, Rex Ying, Kaize Ding, Faisal Mahmood, Wengong Jin
机构
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Program of Computational Biology and Bioinforamtics, Yale University(耶鲁大学计算生物学与生物信息学项目)
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Broad Institute of MIT and Harvard(麻省理工学院与哈佛大学博德研究所)
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Department of Statistics and Data Science, Northwestern University(西北大学统计与数据科学系)
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Department of Computer Science, Northeastern University(东北大学计算机科学系)
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Department of Computer Science, Harvard University(哈佛大学计算机科学系)
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Department of Pathology, Yale University(耶鲁大学病理学系)
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Department of Anatomic Pathology and Laboratory Medicine, Hospital of the University of Pennsylvania(宾夕法尼亚大学医院解剖病理学与检验医学系)
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Department of Pathology and Laboratory Medicine, University of California, San Francisco(加州大学旧金山分校病理学与检验医学系)
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Department of Pathology and Laboratory Medicine, KK Women’s and Children’s Hospital(竹脚妇幼医院病理学与检验医学系)
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Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania(宾夕法尼亚大学佩雷尔曼医学院生物统计学、流行病学与信息学系)
PathoSage: Towards Multi-Source Evidence Adjudication in Pathology via Experience-Aware Agentic Workflow
PathoSage:通过经验感知的代理工作流实现病理学多源证据裁决
Chengyang Zhang, Wenchuan Zhang, Bo Li, Mengran Li, Bob Zhang, Yuhao Yi, Hong Bu, Jiancheng Lv
机构
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College of Computer Science, Sichuan University(四川大学计算机科学学院)
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Department of Pathology and Institute of Clinical Pathology, West China Hospital, Sichuan University(四川大学华西医院病理科/临床病理研究所)
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Department of Computer and Information Science, University of Macau(澳门大学计算机与信息科学系)
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School of Intelligent Systems Engineering, Sun Yat-sen University(中山大学智能工程学院)