医学 AI

Stochastic Block Coordinate Frank-Wolfe Algorithm for Large-Scale Biological Network Alignment

Yijie Wang, Xiaoning Qian

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Exposing ambiguities in a relation-extraction gold standard with crowdsourcing

Tong Shu Li, Benjamin M. Good, Andrew I. Su

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 4 pages, 3 figures In: Bio-Ontologies SIG, ISMB: 10 July 2015, Dublin

Therapeutic target discovery using Boolean network attractors: avoiding pathological phenotypes

Arnaud Poret, Jean-Pierre Boissel

专题命中 生物医学文本 ：pathology(abstract)；分类 q-bio

Comments Since the publication of this article and among the possible improvements mentioned in the Conclusion, two improvements have been done: extending the algorithm for multivalued logic and considering the basins of attraction of the pathological attractors for selecting the therapeutic bullets

Journal ref Comptes Rendus Biologies, Elsevier, 2014, 337 (12), pp.661-678.

Extraction of Pharmacokinetic Evidence of Drug-drug Interactions from the Literature

Artemy Kolchinsky, Anália Lourenço, Heng-Yi Wu, Lang Li, Luis M. Rocha

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments PLOS One (2015)

Encapsulation of a polymer by an icosahedral virus

Oren M. Elrad, Michael F. Hagan

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments This is an author-created, un-copyedited version of an article accepted for publication in Physical Biology. IOP Publishing Ltd is not responsible for any errors or omissions in this version of the manuscript or any version derived from it. The definitive publisher authenticated version is expected to be published online in November 2010

Mechanisms of viral capsid assembly around a polymer

Aleksandr Kivenson, Michael F. Hagan

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 7 figures

A time scales approach to coinfection by opportunistic diseases

Marcos Marvá, Ezio Venturino, Rafael Bravo de la Parra

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

LMM-Lasso: A Lasso Multi-Marker Mixed Model for Association Mapping with Population Structure Correction

Barbara Rakitsch, Christoph Lippert, Oliver Stegle, Karsten Borgwardt

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Unzipping and binding of small interfering RNA with single walled Carbon Nanotube: a platform for small interfering RNA delivery

Mogurampelly Santosh, Swati Panigrahi, Dhananjay Bhattacharyya, A. K. Sood, Prabal K Maiti

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 28 pages, 7 figures, 4 tables

Journal ref J. Chem. Phys. 136, 065106 (2012)

Imputation of truncated p-values for meta-analysis methods and its genomic application

Shaowu Tang, Ying Ding, Etienne Sibille, Jeffrey S. Mogil, William R. Lariviere, George C. Tseng

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Published in at http://dx.doi.org/10.1214/14-AOAS747 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org)

Journal ref Annals of Applied Statistics 2014, Vol. 8, No. 4, 2150-2174

Numerical Model for the Deformation of Nucleated Cells by Optical Stretchers

Ihab Sraj, Joshua Francois, David W. M. Marr, Charles D. Eggleton

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Approximate discrete dynamics of EMG signal

Sayan Mukherjee, Sanjay Kumar Palit, D. K. Bhattacharya

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref Applied Mathematics and Computation 243 (15 September 2014) 879-888

Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis

Miguel O. Bernabeu, Martin Jones, Jens H. Nielsen, Timm Krüger, Rupert W. Nash, Derek Groen, Sebastian Schmieschek, James Hetherington, Holger Gerhardt, Claudio A. Franco, Peter V. Coveney

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 34 pages, 12 figures, accepted for publication at the Journal of the Royal Society Interface

Journal ref J. R. Soc. Interface 6 October 2014 vol. 11 no. 99 20140543

Protein adsorption onto Fe3O4 nanoparticles with opposite surface charge and its impact on cell uptake

M. P. Catalayud, B. Sanz, V. Raffa, C. Riggio, M. R. Ibarra, G. F. Goya

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 32 pages, 10 figures

Journal ref Biomaterials, Volume: 35 Issue: 24, p.6389 (2014)

Graph theory enables drug repurposing. How a mathematical model can drive the discovery of hidden Mechanisms of Action

Ruggero Gramatica, T. Di Matteo, Stefano Giorgetti, Massimo Barbiani, Dorian Bevec, Tomaso Aste

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 8 pages, 7 figures

Journal ref PLoS ONE 9 (2013) e84912

Entropy of leukemia on multidimensional morphological and molecular landscapes

Jose M. G. Vilar

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 15 pages, 4 figures, and supplementary information

Journal ref Phys. Rev. X 4, 021038 (2014)

Virus Assembly on a Membrane is Facilitated by Membrane Microdomains

Teresa Ruiz-Herrero, Michael F. Hagan

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Understanding Health and Disease with Multidimensional Single-Cell Methods

Julián Candia, Jayanth R. Banavar, Wolfgang Losert

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 25 pages, 7 figures; revised version with minor changes. To appear in J. Phys.: Cond. Matt

Journal ref J. Phys.: Condens. Matter 26 (2014) 073102

Measurement of statistical evidence on an absolute scale following thermodynamic principles

V. J. Vieland, J. Das, S. E. Hodge, S. -C. Seok

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Final version of manuscript as published in Theory in Biosciences (2013)

Journal ref Theory Biosci 132:181-194 (2013)

Parenclitic networks: a multilayer description of heterogeneous and static data-sets

Massimiliano Zanin, Joaquín Medina Alcazar, Jesus Vicente Carbajosa, David Papo, M. Gomez Paez, Pedro Sousa, Ernestina Menasalvas, Stefano Boccaletti

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 5 pages, 4 figures

Characteristic Direction Approach to Identify Differentially Expressed Genes

Neil R. Clark, Kevin Hu, Edward Y. Chen, Qioanan Duan, Avi Ma`ayan

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 22 pages, 8 figures

Towards structured sharing of raw and derived neuroimaging data across existing resources

D. B. Keator, K. Helmer, J. Steffener, J. A. Turner, T. G. M. Van Erp, S. Gadde, N. Ashish, G. A. Burns, B. N. Nichols, S. S. Ghosh

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Pattern Analysis of Tandem Repeats in Nlrp1

Sim-Hui Tee

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Preventing common hereditary disorders through time-separated twinning

Alexander Churbanov, Levon Abrahamyan

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Supporting web site http://prevmed.big.ac.cn contains more information. Poster on the project is available at http://f1000.com/posters/browse/summary/1092806

Modeling Viral Capsid Assembly

Michael F. Hagan

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 42 pages (single column), 24 figures. Will appear in: Advances in Chemical Physics, vol. 155 (2013)

Biological Database of Images and Genomes: tools for community annotations linking image and genomic information

Andrew T. Oberlin, Dominika A. Jurkovic, Mitchell F. Balish, Iddo Friedberg

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments This article has been submitted for publication in Database ©: 2012-2013 Iddo Friedberg Published by Oxford University Press on behalf of all authors. All rights reserved

Tellipsoid: Exploiting inter-gene correlation for improved detection of differential gene expression

Keyur Desai, J. R. Deller,, J. Justin McCormick

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 19 pages, Submitted to Bioinformatics

Discriminating different classes of biological networks by analyzing the graphs spectra distribution

Daniel Yasumasa Takahashi, João Ricardo Sato, Carlos Eduardo Ferreira, André Fujita

专题命中 生物医学文本 ：diagnosis(abstract)；分类 q-bio

Evolutionary algorithms in genetic regulatory networks model

Khalid Raza, Rafat Parveen

专题命中 生物医学文本 ：diagnosis(abstract)；分类 q-bio

Comments 10 pages, 3 figures and 1 table

Journal ref Journal of Advanced Bioinformatics Applications and Research 3(1):271-280, 2012

Human olfactory receptor 17-40 as active part of a nanobiosensor: A microscopic investigation of its electrical properties

Eleonora Alfinito, Jean-Francois Millithaler, Lino Reggiani, Nadia Zine, Nicole Jaffrezic-Renault

专题命中 生物医学文本 ：diagnosis(abstract)；分类 q-bio

Comments 6 pages, 6 figures, DOI:10.1039/c1ra00025

Journal ref RCS Advances 2011