医学 AI

Discriminating sample groups with multi-way data

Tianmeng Lyu, Eric F. Lock, Lynn E. Eberly

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 25 pages, 5 figures, 2 tables

Journal ref Biostatistics 18(3), 434-450, 2017

OMICtools: a community-driven search engine for biological data analysis

Helene Perrin, Marion Denorme, Julien Grosjean, OMICtools community, Emeric Dynomant, Vincent J. Henry, Fabien Pichon, Stefan Darmoni, Arnaud Desfeux, Bruno J. Gonzalez

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 11 pages, 3 figures

Methods to Expand Cell Signaling Models using Automated Reading and Model Checking

Kai-Wen Liang, Qinsi Wang, Cheryl Telmer, Divyaa Ravichandran, Peter Spirtes, Natasa Miskov-Zivanov

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 15 pages, 6 figures, accepted by 15th International Conference on Computational Methods in Systems Biology (CMSB), 2017

Computational Approaches for Disease Gene Identification

Peng Yang

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments PhD thesis, Nanyang Technological University, May 2013

OncoScore: a novel, Internet-based tool to assess the oncogenic potential of genes

Rocco Piazza, Daniele Ramazzotti, Roberta Spinelli, Alessandra Pirola, Luca De Sano, Pierangelo Ferrari, Vera Magistroni, Nicoletta Cordani, Nitesh Sharma, Carlo Gambacorti-Passerini

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Ultrasensitive quantification of dextran sulfate by a mix-and-read fluorescent probe assay

Nathalie Groß, Dumitru Arian, Ulrich Warttinger, Roland Krämer

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 10 pages, 1 figure, 2 schemes, 2 tables

Diminishing Return for Increased Mappability with Longer Sequencing Reads: Implications of the k-mer Distributions in the Human Genome

Wentian Li, Jan Freudenberg, Pedro Miramontes

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 5 figures

Journal ref BMC Bioinformatics, 15:2 (2014)

Generation and precise control of dynamic biochemical gradients for cellular assays

Yasushi Saka, Murray MacPherson, Claudiu V. Giuraniuc

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Main text 18 pages (7 figures), Supplementary information 10 pages (7 supplementary figures)

Journal ref Physica A 470 (2017) 132-145

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Yuxiang Jiang, Tal Ronnen Oron, Wyatt T Clark, Asma R Bankapur, Daniel D'Andrea, Rosalba Lepore, Christopher S Funk, Indika Kahanda, Karin M Verspoor, Asa Ben-Hur, Emily Koo, Duncan Penfold-Brown, Dennis Shasha, Noah Youngs, Richard Bonneau, Alexandra Lin, Sayed ME Sahraeian, Pier Luigi Martelli, Giuseppe Profiti, Rita Casadio, Renzhi Cao, Zhaolong Zhong, Jianlin Cheng, Adrian Altenhoff, Nives Skunca, Christophe Dessimoz, Tunca Dogan, Kai Hakala, Suwisa Kaewphan, Farrokh Mehryary, Tapio Salakoski, Filip Ginter, Hai Fang, Ben Smithers, Matt Oates, Julian Gough, Petri Törönen, Patrik Koskinen, Liisa Holm, Ching-Tai Chen, Wen-Lian Hsu, Kevin Bryson, Domenico Cozzetto, Federico Minneci, David T Jones, Samuel Chapman, Dukka B K. C., Ishita K Khan, Daisuke Kihara, Dan Ofer, Nadav Rappoport, Amos Stern, Elena Cibrian-Uhalte, Paul Denny, Rebecca E Foulger, Reija Hieta, Duncan Legge, Ruth C Lovering, Michele Magrane, Anna N Melidoni, Prudence Mutowo-Meullenet, Klemens Pichler, Aleksandra Shypitsyna, Biao Li, Pooya Zakeri, Sarah ElShal, Léon-Charles Tranchevent, Sayoni Das, Natalie L Dawson, David Lee, Jonathan G Lees, Ian Sillitoe, Prajwal Bhat, Tamás Nepusz, Alfonso E Romero, Rajkumar Sasidharan, Haixuan Yang, Alberto Paccanaro, Jesse Gillis, Adriana E Sedeño-Cortés, Paul Pavlidis, Shou Feng, Juan M Cejuela, Tatyana Goldberg, Tobias Hamp, Lothar Richter, Asaf Salamov, Toni Gabaldon, Marina Marcet-Houben, Fran Supek, Qingtian Gong, Wei Ning, Yuanpeng Zhou, Weidong Tian, Marco Falda, Paolo Fontana, Enrico Lavezzo, Stefano Toppo, Carlo Ferrari, Manuel Giollo, Damiano Piovesan, Silvio Tosatto, Angela del Pozo, José M Fernández, Paolo Maietta, Alfonso Valencia, Michael L Tress, Alfredo Benso, Stefano Di Carlo, Gianfranco Politano, Alessandro Savino, Hafeez Ur Rehman, Matteo Re, Marco Mesiti, Giorgio Valentini, Joachim W Bargsten, Aalt DJ van Dijk, Branislava Gemovic, Sanja Glisic, Vladmir Perovic, Veljko Veljkovic, Nevena Veljkovic, Danillo C Almeida-e-Silva, Ricardo ZN Vencio, Malvika Sharan, Jörg Vogel, Lakesh Kansakar, Shanshan Zhang, Slobodan Vucetic, Zheng Wang, Michael JE Sternberg, Mark N Wass, Rachael P Huntley, Maria J Martin, Claire O'Donovan, Peter N Robinson, Yves Moreau, Anna Tramontano, Patricia C Babbitt, Steven E Brenner, Michal Linial, Christine A Orengo, Burkhard Rost, Casey S Greene, Sean D Mooney, Iddo Friedberg, Predrag Radivojac

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Submitted to Genome Biology

Multiple Sclerosis and Geomagnetic Disturbances: Investigating a Potentially Important Environmental Risk Factor

Seyed Aidin Sajedi, Fahimeh Abdollahi

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 29 pages, 2 figures

One-Dimensional Structural Properties of Proteins in the Coarse-Grained CABS Model

Sebastian Kmiecik, Andrzej Kolinski

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref Prediction of Protein Secondary Structure, Methods in Molecular Biology, vol 1484, pp 83-113, 2017

Towards a HPC-oriented parallel implementation of a learning algorithm for bioinformatics applications

Gianni D'Angelo, Salvatore Rampone

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 14 pages, BMC Bioinformatics 2014, 15(Suppl 5):S2; http://www.biomedcentral.com/1471-2105/15/S5/S2

Journal ref BMC Bioinformatics201415(Suppl 5):S2, 6 May 2014

Quantitative Molecular Scaling Theory of Protein Amino Acid Sequences, Structure, and Functionality

J. C. Phillips

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 53 pages, 16 figures

Global analysis of VHHs framework regions with a structural alphabet

Floriane Noël, Alain Malpertuy, Alexandre De Brevern

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref Biochimie, Elsevier, 2016, 131, pp.11 - 19

Characterizing the structure of protein-protein interaction networks

Allan A. Zea, Antonio Rueda-Toicen

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 10 pages, 3 figures. Conference: CIMENICS XIII at Caracas, Venezuela, 2016

Minimal Immunogenic Epitopes Have Nine Amino Acids

J. C. Phillips

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 7 pages, 2 figures

MetaboTools: A comprehensive toolbox for analysis of genome-scale metabolic models

Maike K. Aurich, Ronan M. T. Fleming, Ines Thiele

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Design and Microfabrication Considerations for Reliable Flexible Intracortical Implants

Harbaljit S. Sohal, Konstantin Vassilevski, Andrew Jackson, Stuart N. Baker, Anthony O'Neill

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments The final three authors contributed equally to this work

Genetically designed biomolecular capping system for mesoporous silica nanoparticles enables receptor-mediated cell uptake and controlled drug release

Stefan Datz, Christian Argyo, Michael Gattner, Veronika Weiss, Korbinian Brunner, Johanna Bretzler, Constantin von Schirnding, Fabio Spada, Hanna Engelke, Milan Vrabel, Christoph Bräuchle, Thomas Carell, Thomas Bein

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 40 pages, Article including Supporting Information

Nanodiamonds with silicon vacancy defects for non-toxic photostable fluorescent labeling of neural precursor cells

Tobias D. Merson, Stefania Castelletto, Igor Aharonovich, Alisa Turbic, Trevor J. Kilpatrick, Ann M. Turnley

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments The paper was accepted for publication in Optics letters

Disentangling Brain Graphs: A Note on the Conflation of Network and Connectivity Analyses

Sean L. Simpson, Paul J. Laurienti

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments In Press, Brain Connectivity 2016

Immune response to functionalized mesoporous silica nanoparticles for targeted drug delivery

S. Heidegger, S. Niedermayer, A. Schmidt, D. Gößl, C. Argyo, S. Endres, T. Bein, C. Bourquin

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments The manuscript includes 23 pages, 6 figures, 1 table

Quantifying alternative splicing from paired-end RNA-sequencing data

David Rossell, Camille Stephan-Otto Attolini, Manuel Kroiss, Almond Stöcker

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Published in at http://dx.doi.org/10.1214/13-AOAS687 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org). With corrections

Journal ref Annals of Applied Statistics 2014, Vol. 8, No. 1, 309-330

Mapping high-growth phenotypes in the flux space of microbial metabolism

Oriol Güell, Francesco Alessandro Massucci, Francesc Font-Clos, Francesc Sagués, M. Ángeles Serrano

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Pluripotency, differentiation, and reprogramming: A gene expression dynamics model with epigenetic feedback regulation

Tadashi Miyamoto, Chikara Furusawa, Kunihiko Kaneko

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Principal component gene set enrichment (PCGSE)

H. Robert Frost, Zhigang Li, Jason H. Moore

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref BioData Mining 2015, 8:25

Will solid-state drives accelerate your bioinformatics? In-depth profiling, performance analysis, and beyond

Sungmin Lee, Hyeyoung Min, Sungroh Yoon

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Availability: http://best.snu.ac.kr/pub/biossd; to be published in Briefings in Bioinformatics

Integration of Gene Expression Data and Methylation Reveals Genetic Networks for Glioblastoma

Francesco Gadaleta, Kyrylo Bessonov

专题命中 生物医学文本 ：pathology(abstract)；分类 q-bio

Comments This paper has been withdrawn by the author due to submission to commercial journal

Hierarchy in Gene Expression is Predictive for Adult Acute Myeloid Leukemia

Shubham Tripathi, Michael W. Deem

专题命中 生物医学文本 ：diagnosis(abstract)；分类 q-bio

Comments 18 pages, 5 figures, to appear in Physical Biology

A New Procedure for Microarray Experiments to Account for Experimental Noise and the Uncertainty of Probe Response

Alex E Pozhitkov, Peter A Noble, Jaroslaw Bryk, Diethard Tautz

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 16 pages, 8 figures