医学 AI - arXivDaily 专题

2207.06226 2022-07-14 cs.CL cs.IR q-bio.QM 54%

Building a Relation Extraction Baseline for Gene-Disease Associations: A Reproducibility Study

Laura Menotti

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2207.03540 2022-07-11 q-bio.OT 54%

Data integration in systems genetics and aging research

Alexis Rapin, Maroun Bou Sleiman, Johan Auwerx

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 7 pages, 3 figures, Proceedings of the Swiss Research Data Day 2020, Oct. 22 2020. For full conference proceedings see http://www.ressi.ch/sites/default/files/No_special_DLCM.pdf

Journal ref Revue électronique suisse de science de l'information (RESSI) DLCM (Feb. 15 2022) 75-84

2206.09516 2022-06-22 q-bio.QM physics.bio-ph 54%

Open Problems in Mathematical Biology

Sean T. Vittadello, Michael P. H. Stumpf

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 31 pages,2 figures, 115 references

2204.09673 2022-05-26 q-bio.OT 54%

Guidelines for reporting cell types: the MIRACL standard

Tiago Lubiana, Paola Roncaglia, Christopher J. Mungall, Ellen M. Quardokus, Joshua D. Fortriede, David Osumi-Sutherland, Alexander D. Diehl

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 8 pages, 1 figure, 1 table

2112.02540 2022-05-11 cond-mat.soft nlin.PS q-bio.CB 54%

Biofilm Growth Under Elastic Confinement

George T. Fortune, Nuno M. Oliveira, Raymond E. Goldstein

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 5 pages, 3 figures plus Supplementary Material

2204.10286 2022-04-22 q-bio.QM 54%

ProTranslator: zero-shot protein function prediction using textual description

Hanwen Xu, Sheng Wang

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2204.06714 2022-04-15 q-bio.GN 54%

graph-GPA 2.0: A Graphical Model for Multi-disease Analysis of GWAS Results with Integration of Functional Annotation Data

Qiaolan Deng, Jin Hyun Nam, Ayse Selen Yilmaz, Won Chang, Maciej Pietrzak, Lang Li, Hang J. Kim, Dongjun Chung

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2101.08765 2022-04-14 stat.ME math.ST q-bio.QM stat.AP stat.TH 54%

Robust Differential Abundance Test in Compositional Data

Shulei Wang

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2203.16261 2022-03-31 q-bio.GN cs.DC cs.SE stat.AP 54%

Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities

Mohammed Alser, Sharon Waymost, Ram Ayyala, Brendan Lawlor, Richard J. Abdill, Neha Rajkumar, Nathan LaPierre, Jaqueline Brito, Andre M. Ribeiro-dos-Santos, Can Firtina, Nour Almadhoun, Varuni Sarwal, Eleazar Eskin, Qiyang Hu, Derek Strong, Byoung-Do, Kim, Malak S. Abedalthagafi, Onur Mutlu, Serghei Mangul

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2202.13282 2022-03-08 q-bio.CB physics.bio-ph q-bio.QM q-bio.SC 54%

The Cell Physiome: What do we need in a computational physiology framework for predicting single cell biology?

Vijay Rajagopal, Senthil Arumugam, Peter Hunter, Afshin Khadangi, Joshua Chung, Michael Pan

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments Minor text edits to fix minor grammatical errors and figure reference

2203.02096 2022-03-07 cs.DC q-bio.BM 54%

Portability for GPU-accelerated molecular docking applications for cloud and HPC: can portable compiler directives provide performance across all platforms?

Mathialakan Thavappiragasam, Wael Elwasif, Ada Sedova

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2202.04039 2022-02-24 cs.NE q-bio.BM 54%

Using Genetic Programming to Predict and Optimize Protein Function

Iliya Miralavy, Alexander Bricco, Assaf Gilad, Wolfgang Banzhaf

专题命中生物医学文本：MRI(abstract)；分类 q-bio

Comments 23 pages, 8 figures and 4 tables

2106.01455 2022-02-01 q-bio.GN physics.bio-ph q-bio.QM 54%

Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics

Anna Pryszlak, Tobias Wenzel, Kiley West Seitz, Falk Hildebrand, Ece Kartal, Marco Raffaele Cosenza, Vladimir Benes, Peer Bork, Christoph Merten

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 18 pages incl. references, 4 main figures and one supplementary figure

Journal ref Cell Reports Methods 12/2021

2201.05593 2022-01-17 q-bio.GN 54%

On the influence of several factors on pathway enrichment analysis

Sarah Mubeen, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2201.05055 2022-01-14 q-bio.GN q-bio.QM stat.ME 54%

Depth Normalization of Small RNA Sequencing: Using Data and Biology to Select a Suitable Method

Yannick Düren, Johannes Lederer, Li-Xuan Qin

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 16 pages, 6 figures

2112.04172 2021-12-09 q-bio.QM 54%

A Cross Entropy test allows quantitative statistical comparison of t-SNE and UMAP representations

Carlos P. Roca1, Oliver T. Burton, Julika Neumann, Samar Tareen, Carly E. Whyte, Stéphanie Humblet-Baron, Adrian Liston

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 26 pages, 5 figures

2109.06123 2021-10-26 cs.AI q-bio.QM 54%

Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery

Yi Nian, Jingcheng Du, Larry Bu, Fang Li, Xinyue Hu, Yuji Zhang, Cui Tao

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments Accepted by CIBB 2021 (The 17th International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics)

2110.12964 2021-10-26 q-bio.GN q-bio.QM stat.ME 54%

RZiMM-scRNA: A regularized zero-inflated mixture model framework for single-cell RNA-seq data

Xinlei Mi, William Bekerman, Peter A. Sims, Peter D. Canoll, Jianhua Hu

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 22 pages, 8 figures

2109.11960 2021-09-29 q-bio.NC cs.CY 54%

Towards a Governance Framework for Brain Data

Marcello Ienca, Joseph J. Fins, Ralf J. Jox, Fabrice Jotterand, Silja Voeneky, Roberto Andorno, Tonio Ball, Claude Castelluccia, Ricardo Chavarriaga, Hervé Chneiweiss, Agata Ferretti, Orsolya Friedrich, Samia Hurst, Grischa Merkel, Fruzsina Molnar-Gabor, Jean-Marc Rickli, James Scheibner, Effy Vayena, Rafael Yuste, Philipp Kellmeyer

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2109.09973 2021-09-22 q-bio.QM 54%

Julia for Biologists

Elisabeth Roesch, Joe G. Greener, Adam L. MacLean, Huda Nassar, Christopher Rackauckas, Timothy E. Holy, Michael P. H. Stumpf

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 17 pages, 6 figures

2109.00429 2021-09-02 q-bio.QM q-bio.CB 54%

Biological applications of ferroelectric materials

Alfonso Blázquez-Castro, Angel García-Cabañes, Mercedes Carrascosa

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 39 pages, 10 figures, 3 tables, 127 references, publication year 2018

Journal ref Applied Physics Reviews, volumen 5, pages 041101, 2018

2109.00232 2021-09-02 q-bio.SC q-bio.CB 54%

Fluorescent redox-dependent labeling of lipid droplets in cultured cells by reduced phenazine methosulfate

Juan C. Stockert, María C. Carou, Adriana G. Casas, María C. García Vior, Sergio D. Ezquerra Riega, María M. Blanco, Jesús Espada, Alfonso Blázquez-Castro, Richard W. Horobin, Daniel M. Lombardo

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 23 pages, 7 figures, 1 table, publication year 2020

Journal ref Heliyon, volume 6, pages e04182, 2020

2106.07492 2021-08-27 physics.comp-ph physics.bio-ph physics.chem-ph q-bio.BM stat.ML 54%

Machine Learning Implicit Solvation for Molecular Dynamics

Yaoyi Chen, Andreas Krämer, Nicholas E. Charron, Brooke E. Husic, Cecilia Clementi, Frank Noé

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 16 pages, 6 figures

Journal ref J. Chem. Phys. 155, 084101 (2021)

1211.2349 2021-08-25 q-bio.MN physics.soc-ph q-bio.QM stat.AP 54%

Gene-based and semantic structure of the Gene Ontology as a complex network

Salvatore Miccichè

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 10 pages, 5 figures, 2 Tables

Journal ref Physica A, 458, 313-328, (2016)

2108.07011 2021-08-23 physics.bio-ph cond-mat.dis-nn cond-mat.soft cond-mat.stat-mech q-bio.CB 54%

Active transport in complex environments

Alejandro Martínez-Calvo, Carolina Trenado-Yuste, Sujit S. Datta

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments Preprint of a chapter in the book \textit{Out-of-Equilibrium Soft Matter: Active Fluids}, to be published by the Royal Society of Chemistry; revised version has added references and corrected typos

2107.05388 2021-07-13 q-bio.QM cond-mat.soft cs.CE 54%

Data-driven Modeling of the Mechanical Behavior of Anisotropic Soft Biological Tissue

Vahidullah Tac, Vivek D. Sree, Manuel K. Rausch, Adrian B. Tepole

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 19 pages, 10 figures

2106.13040 2021-06-25 cond-mat.soft physics.app-ph q-bio.QM 54%

Toward a High Performance IPMC Soft Actuator using A disturbance-aided method

Mohsen Annabestani, Mohammad Hossein Sayad, Pouria Esmaeili-Dokht, Mehdi Fardmanesh

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2106.02609 2021-06-07 q-bio.MN cs.CE q-bio.QM 54%

SBML2Modelica: integrating biochemical models within open-standard simulation ecosystems

Filippo Maggioli, Toni Mancini, Enrico Tronci

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 8 pages, 4 figures

Journal ref Bioinformatics, Volume 36, Issue 7, 1 April 2020, pp 2165-2172, Oxford University Press

2105.13476 2021-05-31 q-bio.QM physics.med-ph stat.ME 54%

The Complex-Pole Filter Representation (COFRE) for spectral modeling of fNIRS signals

Marco A. Pinto Orellana, Peyman Mirtaheri, Hugo L. Hammer

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

2009.00756 2021-05-31 q-bio.NC q-bio.QM 54%

Point estimates, Simpson's paradox and nonergodicity in biological sciences

Madhur Mangalam, Damian G. Kelty-Stephen

专题命中生物医学文本：biomedical(abstract)；分类 q-bio

Comments 22 pages, 3 figures

Journal ref Neuroscience & Biobehavioral Reviews 125 (2021) 98-107

1. 生物医学文本 4508 篇

Building a Relation Extraction Baseline for Gene-Disease Associations: A Reproducibility Study

Data integration in systems genetics and aging research

Open Problems in Mathematical Biology

Guidelines for reporting cell types: the MIRACL standard

Biofilm Growth Under Elastic Confinement

ProTranslator: zero-shot protein function prediction using textual description

graph-GPA 2.0: A Graphical Model for Multi-disease Analysis of GWAS Results with Integration of Functional Annotation Data

Robust Differential Abundance Test in Compositional Data

Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities

The Cell Physiome: What do we need in a computational physiology framework for predicting single cell biology?

Portability for GPU-accelerated molecular docking applications for cloud and HPC: can portable compiler directives provide performance across all platforms?

Using Genetic Programming to Predict and Optimize Protein Function

Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics

On the influence of several factors on pathway enrichment analysis

Depth Normalization of Small RNA Sequencing: Using Data and Biology to Select a Suitable Method

A Cross Entropy test allows quantitative statistical comparison of t-SNE and UMAP representations

Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery

RZiMM-scRNA: A regularized zero-inflated mixture model framework for single-cell RNA-seq data

Towards a Governance Framework for Brain Data

Julia for Biologists

Biological applications of ferroelectric materials

Fluorescent redox-dependent labeling of lipid droplets in cultured cells by reduced phenazine methosulfate

Machine Learning Implicit Solvation for Molecular Dynamics

Gene-based and semantic structure of the Gene Ontology as a complex network

Active transport in complex environments

Data-driven Modeling of the Mechanical Behavior of Anisotropic Soft Biological Tissue

Toward a High Performance IPMC Soft Actuator using A disturbance-aided method

SBML2Modelica: integrating biochemical models within open-standard simulation ecosystems

The Complex-Pole Filter Representation (COFRE) for spectral modeling of fNIRS signals

Point estimates, Simpson's paradox and nonergodicity in biological sciences