医学 AI

Modelling Alzheimer's Protein Dynamics: A Data-Driven Integration of Stochastic Methods, Machine Learning and Connectome Insights

Alec MacIver, Hina Shaheen

专题命中 生物医学文本 ：MRI(abstract)；分类 q-bio

Comments 2 tables, 8 figures

CurateGPT: A flexible language-model assisted biocuration tool

Harry Caufield, Carlo Kroll, Shawn T O'Neil, Justin T Reese, Marcin P Joachimiak, Harshad Hegde, Nomi L Harris, Madan Krishnamurthy, James A McLaughlin, Damian Smedley, Melissa A Haendel, Peter N Robinson, Christopher J Mungall

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

BAMITA: Bayesian Multiple Imputation for Tensor Arrays

Ziren Jiang, Gen Li, Eric F. Lock

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 27 pages, 5 tables, 2 figures

Nanopore DNA Sequencing Technology: A Sociological Perspective

Suadath V, Muhammad Sajeer P

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 10 pages, 2 figures

GPTON: Generative Pre-trained Transformers enhanced with Ontology Narration for accurate annotation of biological data

Rongbin Li, Wenbo Chen, Jinbo Li, Hanwen Xing, Hua Xu, Zhao Li, W. Jim Zheng

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 25 pages, 6 figures

De novo design of high-affinity protein binders with AlphaProteo

Vinicius Zambaldi, David La, Alexander E. Chu, Harshnira Patani, Amy E. Danson, Tristan O. C. Kwan, Thomas Frerix, Rosalia G. Schneider, David Saxton, Ashok Thillaisundaram, Zachary Wu, Isabel Moraes, Oskar Lange, Eliseo Papa, Gabriella Stanton, Victor Martin, Sukhdeep Singh, Lai H. Wong, Russ Bates, Simon A. Kohl, Josh Abramson, Andrew W. Senior, Yilmaz Alguel, Mary Y. Wu, Irene M. Aspalter, Katie Bentley, David L. V. Bauer, Peter Cherepanov, Demis Hassabis, Pushmeet Kohli, Rob Fergus, Jue Wang

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 45 pages, 17 figures

Computational Explorations in Biomedicine: Unraveling Molecular Dynamics for Cancer, Drug Delivery, and Biomolecular Insights using LAMMPS Simulations

Reza Bozorgpour

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 16 pages- 11 figures

BioBricks.ai: A Versioned Data Registry for Life Sciences Data Assets

Yifan Gao, Zakariyya Mughal, Jose A. Jaramillo-Villegas, Marie Corradi, Alexandre Borrel, Ben Lieberman, Suliman Sharif, John Shaffer, Karamarie Fecho, Ajay Chatrath, Alexandra Maertens, Marc A. T. Teunis, Nicole Kleinstreuer, Thomas Hartung, Thomas Luechtefeld

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 23 pages, 2 figures

Identification of Prognostic Biomarkers for Stage III Non-Small Cell Lung Carcinoma in Female Nonsmokers Using Machine Learning

Huili Zheng, Qimin Zhang, Yiru Gong, Zheyan Liu, Shaohan Chen

专题命中 生物医学文本 ：diagnosis(abstract)；分类 q-bio

Comments This paper has been accepted for publication in the IEEE ICBASE 2024 conference

Genome-on-Diet: Taming Large-Scale Genomic Analyses via Sparsified Genomics

Mohammed Alser, Julien Eudine, Onur Mutlu

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Development of Hydrogen Bonding Magnetic Reaction-based Gene Regulation through Cyclic Electromagnetic DNA Simulation in Double-Stranded DNA

Yeon Sook Kim, Dae Gwan Lee, Suk Keun Lee

专题命中 生物医学文本 ：MRI(abstract)；分类 q-bio

Comments Please, find two manuscripts "Development of Hydrogen Bonding Magnetic Reaction-based Gene Regulation through Cyclic Electromagnetic DNA Simulation in Double-Stranded DNA" and "Application of Cyclic Electromagnetic DNA Simulation to Target Oncogenesis-related miRNAs and DNA Motifs: Changes of Protein Signaling Pathway System in RAW 264.7 Cells"

Calculating complexity of large randomized libraries

Yong Kong

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 14 pages, 4 figures

Journal ref Journal of Theoretical Biology 259 (3), 641-645, 2009

ProtT3: Protein-to-Text Generation for Text-based Protein Understanding

Zhiyuan Liu, An Zhang, Hao Fei, Enzhi Zhang, Xiang Wang, Kenji Kawaguchi, Tat-Seng Chua

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments ACL 2024, 9 pages

Simplicity within biological complexity

Natasa Przulj, Noel Malod-Dognin

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 29 pages, 4 figures

The light quantum mechanism of PCR efficiency oscillation with gold nanoparticle concentration

Huan-Huan Fang, Yong-Cong Chen, Ze-Fei Liu, Xiao-Mei Zhu, Ping Ao

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments in Chinese language

In silico bioactivity prediction of proteins interacting with graphene-based nanomaterials guides rational design of biosensor

Jing Ye, Minzhi Fan, Xiaoyu Zhang, Shasha Lu, Mengyao Chai, Yunshan Zhang, Xiaoyu Zhao, Shuang Li, Diming Zhang

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

GENEVIC: GENetic data Exploration and Visualization via Intelligent interactive Console

Anindita Nath, Savannah Mwesigwa, Yulin Dai, Xiaoqian Jiang, Zhongming Zhao

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

A drug classification pipeline for Medicaid claims using RxNorm

Nicholas Williams, Kara E. Rudolph

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

The use of next-generation sequencing in personalized medicine

Liya Popova, Valerie J. Carabetta

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 37 pages, 3 figures, 1 table

Single-channel and multi-channel electrospinning for the fabrication of PLA/PCL tissue engineering scaffolds: comparative study of the materials physicochemical and biological properties

Semen Goreninskii, Ulyana Chernova, Elisaveta Prosetskaya, Alina Laushkina, Alexander Mishanin, Alexey Golovkin, Evgeny Bolbasov

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

The structure is the message: preserving experimental context through tensor decomposition

Zhixin Cyrillus Tan, Aaron S. Meyer

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

PepGB: Facilitating peptide drug discovery via graph neural networks

Yipin Lei, Xu Wang, Meng Fang, Han Li, Xiang Li, Jianyang Zeng

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Molecular causality in the advent of foundation models

Sebastian Lobentanzer, Pablo Rodriguez-Mier, Stefan Bauer, Julio Saez-Rodriguez

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 22 pages, 0 figures, 87 references; submitted to MSB

Gene-associated Disease Discovery Powered by Large Language Models

Jiayu Chang, Shiyu Wang, Chen Ling, Zhaohui Qin, Liang Zhao

专题命中 生物医学文本 ：diagnosis(abstract)；分类 q-bio

Comments This is the official paper accepted by AAAI 2024 Workshop on Large Language Models for Biological Discoveries

dabih -- encrypted data storage and sharing platform

Michael Huttner, Jakob Simeth, Renato Liguori, Fulvia Ferrazzi, Rainer Spang

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 16 pages including 4 figures and 5 appendices

Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health

Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Scaffolding fundamentals and recent advances in sustainable scaffolding techniques for cultured meat development

AMM Nurul Alam, Chan-Jin Kim, So-Hee Kim, Swati Kumari, Eun-Yeong Lee, Young-Hwa Hwang, Seon-Tea Joo

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

A new promising material for biological applications: multi-level physical modification of AgNPs-decorated PEEK

Jana Pryjmakova, Daniel Grossberger, Anna Kutova, Barbora Vokata, Miroslav Slouf, Petr Slepicka, Jakub Siegel

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Threshold distribution of equal states for quantitative amplitude fluctuations

Yao Wenpo, Yao Wenli, Wang Jun

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref Physiol. Meas. 44 095004 (2023)

Quorum Sensing as a long-range interaction for bacteria growth and bioluminescence

E. Alfinito, M. Beccaria, M. Cesaria

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 8 pages, 5 figures

Journal ref European Physical Journal E, 2023, 46(10), 94