医学 AI

A Multi-scale Linear-time Encoder for Whole-Slide Image Analysis

全滑动图像分析的多尺度线性时间编码器

Jagan Mohan Reddy Dwarampudi, Joshua Wong, Hien Van Nguyen, Tania Banerjee

机构 * Department of Electrical and Computer Engineering, University of Houston（电子与计算机工程系，休斯顿大学） ； Department of Information Science Technology, University of Houston（信息科学与技术系，休斯顿大学） ； Department of Neurology, College of Medicine, University of Florida（神经病学系，医学学院，佛罗里达大学） 纠错

专题命中 病理影像 ：biomedical(abstract)；分类 cs.CV、cs.LG、q-bio

AI总结 MARBLE是一种基于Mamba的多尺度线性时间编码器，通过并行处理和线性时间建模，实现高效且可扩展的全滑动图像分析。

Comments Accepted to ISBI 2026, 4 pages with 2 figures

Transfer Learning from One Cancer to Another via Deep Learning Domain Adaptation

通过深度学习领域适应从一种癌症转移到另一种癌症的迁移学习

Justin Cheung, Samuel Savine, Calvin Nguyen, Lin Lu, Alhassan S. Yasin

机构 * Johns Hopkins University（约翰霍普金斯大学） 纠错

专题命中 病理影像 ：medical image(abstract)；分类 cs.CV、cs.LG、q-bio

AI总结 本研究通过深度学习领域适应技术，将乳腺和结肠的标注数据训练的DANN应用于肺腺癌的未标注数据，显著提升分类准确率，同时验证了染色标准化对不同领域适应效果的影响。

Comments 8 pages, 6 figures, 3 table

Reconstruction of three-dimensional shapes of normal and disease-related erythrocytes from partial observations using multi-fidelity neural networks

Haizhou Wen, He Li, Zhen Li

机构 * Department of Mechanical Engineering（机械工程系） 纠错

专题命中 病理影像 ：pathology(abstract)；分类 cs.LG、q-bio、eess.IV

Comments 29 pages, 10 figures, 3 appendices

Morpho-Genomic Deep Learning for Ovarian Cancer Subtype and Gene Mutation Prediction from Histopathology

Gabriela Fernandes

机构 * Department of Periodontics and Endodontics, Department of Oral Biology, State University of New York (SUNY) at Buffalo（牙科医学系与口腔生物学系，纽约州立大学（SUNY）布法罗分校） 纠错

专题命中 病理影像 ：diagnosis(abstract)；分类 cs.CV、q-bio、eess.IV

Automated Morphological Analysis of Neurons in Fluorescence Microscopy Using YOLOv8

Banan Alnemri, Arwa Basbrain

专题命中 病理影像 ：biomedical(abstract)；分类 cs.CV、q-bio、eess.IV

Comments 7 pages, 2 figures and 2 tables

A tissue and cell-level annotated H&E and PD-L1 histopathology image dataset in non-small cell lung cancer

Joey Spronck, Leander van Eekelen, Dominique van Midden, Joep Bogaerts, Leslie Tessier, Valerie Dechering, Muradije Demirel-Andishmand, Gabriel Silva de Souza, Roland Nemeth, Enrico Munari, Giuseppe Bogina, Ilaria Girolami, Albino Eccher, Balazs Acs, Ceren Boyaci, Natalie Klubickova, Monika Looijen-Salamon, Shoko Vos, Francesco Ciompi

机构 * Radboud University Medical Center（拉德堡德大学医学中心） ； University of Brescia（布雷西亚大学） ； Ospedale Sacro Cuore（圣十字医院） ； Provincial Hospital of Bolzano (SABES-ASDAA)（博尔扎诺省医院） ； University and Hospital Trust of Verona（威尼斯大学与医院信托） ； Karolinska University Hospital（卡罗林斯卡大学医院） ； Biopticka Laboratory, Ltd（Biopticka实验室） 纠错

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

Comments Our dataset is available at 'https://zenodo.org/records/15674785' and our code is available at 'https://github.com/DIAGNijmegen/ignite-data-toolkit'

Open-radiomics: A Collection of Standardized Datasets and a Technical Protocol for Reproducible Radiomics Machine Learning Pipelines

Khashayar Namdar, Matthias W. Wagner, Birgit B. Ertl-Wagner, Farzad Khalvati

专题命中 病理影像 ：MRI(abstract)；分类 cs.CV、cs.LG、q-bio

Computational Methods for Breast Cancer Molecular Profiling through Routine Histopathology: A Review

Suchithra Kunhoth, Somaya Al- Maadeed, Younes Akbari, Rafif Al Saady

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、cs.LG、q-bio

QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis

Chao-Hui Huang, Sara Lichtarge, Diane Fernandez

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

Comments 18 pages, 14 figures

PathoGen-X: A Cross-Modal Genomic Feature Trans-Align Network for Enhanced Survival Prediction from Histopathology Images

Akhila Krishna, Nikhil Cherian Kurian, Abhijeet Patil, Amruta Parulekar, Amit Sethi

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

Generating Seamless Virtual Immunohistochemical Whole Slide Images with Content and Color Consistency

Sitong Liu, Kechun Liu, Samuel Margolis, Wenjun Wu, Stevan R. Knezevich, David E Elder, Megan M. Eguchi, Joann G Elmore, Linda Shapiro

专题命中 病理影像 ：medical image(abstract)；分类 cs.CV、q-bio、eess.IV

Single-shot reconstruction of three-dimensional morphology of biological cells in digital holographic microscopy using a physics-driven neural network

Jihwan Kim, Youngdo Kim, Hyo Seung Lee, Eunseok Seo, Sang Joon Lee

专题命中 病理影像 ：biomedical(abstract)；分类 cs.CV、cs.LG、q-bio

Comments 35 pages, 7 figures, 1 table

Deep learning for automated detection of breast cancer in deep ultraviolet fluorescence images with diffusion probabilistic model

Sepehr Salem Ghahfarokhi, Tyrell To, Julie Jorns, Tina Yen, Bing Yu, Dong Hye Ye

专题命中 病理影像 ：medical image(abstract)；biomedical(comments,journal_ref)；分类 cs.CV

Comments IEEE International Symposium on Biomedical Imaging 2024

Journal ref 2024 IEEE International Symposium on Biomedical Imaging (ISBI), May 27-30, 2024, Athens, Greece

TriDeNT: Triple Deep Network Training for Privileged Knowledge Distillation in Histopathology

Lucas Farndale, Robert Insall, Ke Yuan

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、cs.LG、q-bio

A vision transformer-based framework for knowledge transfer from multi-modal to mono-modal lymphoma subtyping models

Bilel Guetarni, Feryal Windal, Halim Benhabiles, Marianne Petit, Romain Dubois, Emmanuelle Leteurtre, Dominique Collard

专题命中 病理影像 ：diagnosis(abstract)；分类 cs.CV、q-bio、eess.IV

Revisiting Adaptive Cellular Recognition Under Domain Shifts: A Contextual Correspondence View

Jianan Fan, Dongnan Liu, Canran Li, Hang Chang, Heng Huang, Filip Braet, Mei Chen, Weidong Cai

专题命中 病理影像 ：pathology(abstract)；分类 cs.LG、q-bio、eess.IV

Comments ECCV 2024 main conference

The Berkeley Single Cell Computational Microscopy (BSCCM) Dataset

Henry Pinkard, Cherry Liu, Fanice Nyatigo, Daniel A. Fletcher, Laura Waller

专题命中 病理影像 ：biomedical(abstract)；分类 cs.CV、cs.LG、q-bio

The State of Applying Artificial Intelligence to Tissue Imaging for Cancer Research and Early Detection

Michael Robben, Amir Hajighasemi, Mohammad Sadegh Nasr, Jai Prakesh Veerla, Anne M. Alsup, Biraaj Rout, Helen H. Shang, Kelli Fowlds, Parisa Boodaghi Malidarreh, Paul Koomey, MD Jillur Rahman Saurav, Jacob M. Luber

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

Journal ref F1000Research 2023, 12:1436

Clinically Relevant Latent Space Embedding of Cancer Histopathology Slides through Variational Autoencoder Based Image Compression

Mohammad Sadegh Nasr, Amir Hajighasemi, Paul Koomey, Parisa Boodaghi Malidarreh, Michael Robben, Jillur Rahman Saurav, Helen H. Shang, Manfred Huber, Jacob M. Luber

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

Journal ref 2023 IEEE ISBI, Cartagena, Colombia, 2023, pp. 1-5

Deep learning-based detection of morphological features associated with hypoxia in H&E breast cancer whole slide images

Petru Manescu, Joseph Geradts, Delmiro Fernandez-Reyes

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、cs.LG、q-bio

Comments Under review

Predicting Ki67, ER, PR, and HER2 Statuses from H&E-stained Breast Cancer Images

Amir Akbarnejad, Nilanjan Ray, Penny J. Barnes, Gilbert Bigras

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

An AI-Ready Multiplex Staining Dataset for Reproducible and Accurate Characterization of Tumor Immune Microenvironment

Parmida Ghahremani, Joseph Marino, Juan Hernandez-Prera, Janis V. de la Iglesia, Robbert JC Slebos, Christine H. Chung, Saad Nadeem

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

Comments MICCAI'23 (Early Accept). First two authors contributed equally. Forward correspondence to last two authors

Towards Reliable Colorectal Cancer Polyps Classification via Vision Based Tactile Sensing and Confidence-Calibrated Neural Networks

Siddhartha Kapuria, Tarunraj G. Mohanraj, Nethra Venkatayogi, Ozdemir Can Kara, Yuki Hirata, Patrick Minot, Ariel Kapusta, Naruhiko Ikoma, Farshid Alambeigi

专题命中 病理影像 ：diagnosis(abstract)；分类 cs.CV、cs.LG、q-bio

Slideflow: Deep Learning for Digital Histopathology with Real-Time Whole-Slide Visualization

James M. Dolezal, Sara Kochanny, Emma Dyer, Andrew Srisuwananukorn, Matteo Sacco, Frederick M. Howard, Anran Li, Prajval Mohan, Alexander T. Pearson

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

NASDM: Nuclei-Aware Semantic Histopathology Image Generation Using Diffusion Models

Aman Shrivastava, P. Thomas Fletcher

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、q-bio、eess.IV

Comments 10 pages, 3 figures

Deep Learning Provides Rapid Screen for Breast Cancer Metastasis with Sentinel Lymph Nodes

Kareem Allam, Xiaohong Iris Wang, Songlin Zhang, Jianmin Ding, Kevin Chiu, Karan Saluja, Amer Wahed, Hongxia Sun, Andy N. D. Nguyen

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、cs.LG、q-bio

Comments 9 pages, 3 figures, 5 tables

Giga-SSL: Self-Supervised Learning for Gigapixel Images

Tristan Lazard, Marvin Lerousseau, Etienne Decencière, Thomas Walter

专题命中 病理影像 ：diagnosis(abstract)；分类 cs.CV、cs.LG、q-bio

Label-free virtual HER2 immunohistochemical staining of breast tissue using deep learning

Bijie Bai, Hongda Wang, Yuzhu Li, Kevin de Haan, Francesco Colonnese, Yujie Wan, Jingyi Zuo, Ngan B. Doan, Xiaoran Zhang, Yijie Zhang, Jingxi Li, Wenjie Dong, Morgan Angus Darrow, Elham Kamangar, Han Sung Lee, Yair Rivenson, Aydogan Ozcan

专题命中 病理影像 ：biomedical(abstract)；分类 cs.LG、q-bio、eess.IV

Comments 26 Pages, 5 Figures

Journal ref BME Frontiers (2022)

A robust and lightweight deep attention multiple instance learning algorithm for predicting genetic alterations

Bangwei Guo, Xingyu Li, Miaomiao Yang, Hong Zhang, Xu Steven Xu

专题命中 病理影像 ：pathology(abstract)；分类 cs.CV、cs.LG、q-bio

Deep Learning based Prediction of MSI using MMR Markers in Colorectal Cancer

Ruqayya Awan, Mohammed Nimir, Shan E Ahmed Raza, Mohsin Bilal, Johannes Lotz, David Snead, Andrew Robinson, Nasir Rajpoot

专题命中 病理影像 ：diagnosis(abstract)；分类 cs.CV、q-bio、eess.IV