医学 AI - arXivDaily 专题

2002.06161 2021-01-13 cs.DL cs.DB 78%

menoci: Lightweight Extensible Web Portal enabling FAIR Data Management for Biomedical Research Projects

Markus Suhr, Christoph Lehmann, Christian Robert Bauer, Theresa Bender, Cornelius Knopp, Luca Freckmann, Björn Öst Hansen, Christian Henke, Georg Aschenbrandt, Lea Kühlborn, Sophia Rheinländer, Linus Weber, Bartlomiej Marzec, Marcel Hellkamp, Philipp Wieder, Harald Kusch, Ulrich Sax, Sara Yasemin Nussbeck

专题命中生物医学文本：biomedical(title,abstract)

Comments Preprint. 19 pages, 2 figures

Journal ref BMC Bioinformatics 21, 582 (2020)

2002.02375 2020-12-23 cs.IR 78%

Generating Biomedical Question Answering Corpora from Q&A forums

Andre Lamurias, Diana Sousa, Francisco M. Couto

专题命中生物医学文本：biomedical(title,abstract)

1903.08206 2020-12-17 cs.CL cs.IR 78%

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings

Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen

专题命中生物医学文本：biomedical(title,abstract)

2012.01031 2020-12-03 cs.AI cs.CL 78%

Biomedical Knowledge Graph Refinement with Embedding and Logic Rules

Sendong Zhao, Bing Qin, Ting Liu, Fei Wang

专题命中生物医学文本：biomedical(title,abstract)

2011.01504 2020-11-04 cs.CL cs.IR 78%

BioNerFlair: biomedical named entity recognition using flair embedding and sequence tagger

Harsh Patel

专题命中生物医学文本：biomedical(title,abstract)

2011.00398 2020-11-03 cs.CL 78%

Investigation of BERT Model on Biomedical Relation Extraction Based on Revised Fine-tuning Mechanism

Peng Su, K. Vijay-Shanker

专题命中生物医学文本：biomedical(title,abstract)

2010.08250 2020-10-19 physics.bio-ph physics.med-ph 78%

Biodegradable Polymeric Micro/Nano-Structures with Intrinsic Antifouling/Antimicrobial Properties:Relevance in Damaged Skin and Other Biomedical Applications

Mario Milazzo, Giuseppe Gallone, Elena Marcello, Maria Donatella Mariniello, Luca Bruschini, Ipsita Roy, Serena Danti

专题命中生物医学文本：biomedical(title,abstract)

Journal ref Journal of Functional Biomaterials, 11(3), 60, 2020

2010.06060 2020-10-15 cs.CL 78%

BioMegatron: Larger Biomedical Domain Language Model

Hoo-Chang Shin, Yang Zhang, Evelina Bakhturina, Raul Puri, Mostofa Patwary, Mohammad Shoeybi, Raghav Mani

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted for publication at EMNLP 2020

2009.09335 2020-10-13 cs.CL cs.AI 78%

Biomedical Event Extraction with Hierarchical Knowledge Graphs

Kung-Hsiang Huang, Mu Yang, Nanyun Peng

专题命中生物医学文本：biomedical(title,abstract)

Comments 8 pages, 3 figures, Findings of EMNLP 2020 (short)

2010.00074 2020-10-02 cs.AI 78%

Extracting Concepts for Precision Oncology from the Biomedical Literature

Nicholas Greenspan, Yuqi Si, Kirk Roberts

专题命中生物医学文本：biomedical(title,abstract)

2009.12952 2020-09-29 cs.CL 78%

Unsupervised Pre-training for Biomedical Question Answering

Vaishnavi Kommaraju, Karthick Gunasekaran, Kun Li, Trapit Bansal, Andrew McCallum, Ivana Williams, Ana-Maria Istrate

专题命中生物医学文本：biomedical(title,abstract)

Comments To appear in BioASQ workshop 2020

2009.09509 2020-09-22 cs.CL 78%

Relation Extraction from Biomedical and Clinical Text: Unified Multitask Learning Framework

Shweta Yadav, Srivatsa Ramesh, Sriparna Saha, Asif Ekbal

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted for publication at IEEE/ACM Transaction on Computational Biology and Bioinformatics

2009.09223 2020-09-22 cs.CL 78%

BioALBERT: A Simple and Effective Pre-trained Language Model for Biomedical Named Entity Recognition

Usman Naseem, Matloob Khushi, Vinay Reddy, Sakthivel Rajendran, Imran Razzak, Jinman Kim

专题命中生物医学文本：biomedical(title,abstract)

Comments 7 pages

1901.10219 2020-08-20 cs.IR cs.CL 78%

Revised JNLPBA Corpus: A Revised Version of Biomedical NER Corpus for Relation Extraction Task

Ming-Siang Huang, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu

专题命中生物医学文本：biomedical(title,abstract)

Comments 17 pages

Journal ref Briefings in Bioinformatics, 2020, bbaa054

2008.07347 2020-08-19 cs.CL 78%

HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition

Leon Weber, Mario Sänger, Jannes Münchmeyer, Maryam Habibi, Ulf Leser, Alan Akbik

专题命中生物医学文本：biomedical(title,abstract)

Comments - Corrected author list - Updated project link

2008.07189 2020-08-18 cs.CL 78%

Comparison of Syntactic Parsers on Biomedical Texts

Maria Biryukov

专题命中生物医学文本：biomedical(title,abstract)

Comments Most of this work was done in 2018 when the author was primarily affiliated with LCSB, Bioinformatic Core

2008.01526 2020-08-05 cs.IR cs.CL 78%

Multi-Perspective Semantic Information Retrieval in the Biomedical Domain

Samarth Rawal

专题命中生物医学文本：biomedical(title,abstract)

Comments Masters thesis, Arizona State Univ (May, 2020)

2007.14640 2020-07-30 cs.CL 78%

Biomedical and Clinical English Model Packages in the Stanza Python NLP Library

Yuhao Zhang, Yuhui Zhang, Peng Qi, Christopher D. Manning, Curtis P. Langlotz

专题命中生物医学文本：biomedical(title,abstract)

Comments Website: https://stanfordnlp.github.io/stanza/; demo page: http://stanza.run/bio

2004.03354 2020-06-30 cs.CL 78%

Inexpensive Domain Adaptation of Pretrained Language Models: Case Studies on Biomedical NER and Covid-19 QA

Nina Poerner, Ulli Waltinger, Hinrich Schütze

专题命中生物医学文本：biomedical(title,abstract)

2006.13721 2020-06-25 cs.IR cs.CY cs.DL 78%

Mining Misdiagnosis Patterns from Biomedical Literature

Cindy Li, Elizabeth Chen, Guergana Savova, Hamish Fraser, Carsten Eickhoff

专题命中生物医学文本：biomedical(title)；diagnosis(abstract)

Comments AMIA Joint Summits in Translational Science, 2020

Journal ref AMIA Jt Summits Transl Sci Proc. 2020;2020:360-366. Published 2020 May 30

2005.07638 2020-05-26 cs.IR 78%

Beyond MeSH: Fine-Grained Semantic Indexing of Biomedical Literature based on Weak Supervision

Anastasios Nentidis, Anastasia Krithara, Grigorios Tsoumakas, Georgios Paliouras

专题命中生物医学文本：biomedical(title,abstract)

Comments 36 pages, 8 figures; Dictionary-based baselines added and conclusions updated

Journal ref Information Processing and Management 57 (2020) 102282

2005.07119 2020-05-25 physics.flu-dyn cs.DC nlin.CG physics.bio-ph 78%

Efficacy of the FDA nozzle benchmark and the lattice Boltzmann method for the analysis of biomedical flows in transitional regime

Kartik Jain

专题命中生物医学文本：biomedical(title,abstract)

2005.09133 2020-05-20 cs.CL cs.DL 78%

NEJM-enzh: A Parallel Corpus for English-Chinese Translation in the Biomedical Domain

Boxiang Liu, Liang Huang

专题命中生物医学文本：biomedical(title,abstract)

Comments 11 pages, 11 figures, and 2 tables

2005.02799 2020-05-07 cs.CL 78%

An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining

Yifan Peng, Qingyu Chen, Zhiyong Lu

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted by BioNLP 2020

1911.09487 2020-04-27 cs.CL 78%

Chemical-protein Interaction Extraction via Gaussian Probability Distribution and External Biomedical Knowledge

Cong Sun, Zhihao Yang, Leilei Su, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

专题命中生物医学文本：biomedical(title,abstract)

Comments 8 pages, 4 figures, Bioinformatics manuscript

2001.07139 2020-04-22 cs.IR 78%

BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction

Diana Sousa, Francisco M. Couto

专题命中生物医学文本：biomedical(title,abstract)

Comments ECIR 2020

Journal ref Advances in Information Retrieval: 42nd European Conference on IR Research, Volume 12036. 2020. pp. 367-374

2004.06555 2020-04-15 cs.CL 78%

Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation for Biomedical Concepts

Steven Jiang, Weiyi Wu, Naofumi Tomita, Craig Ganoe, Saeed Hassanpour

专题命中生物医学文本：biomedical(title,abstract)

2004.03822 2020-04-09 cs.CL cs.IR 78%

SIA: A Scalable Interoperable Annotation Server for Biomedical Named Entities

Johannes Kirschnick, Philippe Thomas, Roland Roller, Leonhard Hennig

专题命中生物医学文本：biomedical(title,abstract)

Comments 11 pages, 2 figures, published in Journal of Cheminformatics

Journal ref J Cheminform 10, 63 (2018)

2003.08800 2020-03-20 cs.CY cs.SI 78%

Cardiovascular risk and work stress in biomedical researchers in China: An observational, big data study protocol

Fang Zhu, Qian Zhang, Hao Chen, Guocheng Shi, Chen Wen, Zhongqun Zhu, Huiwen Chen

专题命中生物医学文本：biomedical(title,abstract)

1309.6297 2020-02-19 cs.AI cs.LO 78%

Generating Explanations for Biomedical Queries

Esra Erdem, Umut Oztok

专题命中生物医学文本：biomedical(title,abstract)

Comments 42 pages, 14 figures, 4 tables, online appendix (proofs, 24 pages)

Journal ref Theory and Practice of Logic Programming 15 (2015) 35-78

1. 生物医学文本 4507 篇

menoci: Lightweight Extensible Web Portal enabling FAIR Data Management for Biomedical Research Projects

Generating Biomedical Question Answering Corpora from Q&A forums

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings

Biomedical Knowledge Graph Refinement with Embedding and Logic Rules

BioNerFlair: biomedical named entity recognition using flair embedding and sequence tagger

Investigation of BERT Model on Biomedical Relation Extraction Based on Revised Fine-tuning Mechanism

Biodegradable Polymeric Micro/Nano-Structures with Intrinsic Antifouling/Antimicrobial Properties:Relevance in Damaged Skin and Other Biomedical Applications

BioMegatron: Larger Biomedical Domain Language Model

Biomedical Event Extraction with Hierarchical Knowledge Graphs

Extracting Concepts for Precision Oncology from the Biomedical Literature

Unsupervised Pre-training for Biomedical Question Answering

Relation Extraction from Biomedical and Clinical Text: Unified Multitask Learning Framework

BioALBERT: A Simple and Effective Pre-trained Language Model for Biomedical Named Entity Recognition

Revised JNLPBA Corpus: A Revised Version of Biomedical NER Corpus for Relation Extraction Task

HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition

Comparison of Syntactic Parsers on Biomedical Texts

Multi-Perspective Semantic Information Retrieval in the Biomedical Domain

Biomedical and Clinical English Model Packages in the Stanza Python NLP Library

Inexpensive Domain Adaptation of Pretrained Language Models: Case Studies on Biomedical NER and Covid-19 QA

Mining Misdiagnosis Patterns from Biomedical Literature

Beyond MeSH: Fine-Grained Semantic Indexing of Biomedical Literature based on Weak Supervision

Efficacy of the FDA nozzle benchmark and the lattice Boltzmann method for the analysis of biomedical flows in transitional regime

NEJM-enzh: A Parallel Corpus for English-Chinese Translation in the Biomedical Domain

An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining

Chemical-protein Interaction Extraction via Gaussian Probability Distribution and External Biomedical Knowledge

BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction

Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation for Biomedical Concepts

SIA: A Scalable Interoperable Annotation Server for Biomedical Named Entities

Cardiovascular risk and work stress in biomedical researchers in China: An observational, big data study protocol

Generating Explanations for Biomedical Queries