医学 AI - arXivDaily 专题

2308.07333 2023-08-16 cs.DL cs.CE 78%

Computational reproducibility of Jupyter notebooks from biomedical publications

Sheeba Samuel, Daniel Mietchen

专题命中生物医学文本：biomedical(title,abstract)

Comments arXiv admin note: substantial text overlap with arXiv:2209.04308

2308.03447 2023-08-08 cs.AI 78%

Biomedical Knowledge Graph Embeddings with Negative Statements

Rita T. Sousa, Sara Silva, Heiko Paulheim, Catia Pesquita

专题命中生物医学文本：biomedical(title,abstract)

Comments 19 pages, 4 figures

2304.08999 2023-08-08 cs.CL cs.AI 78%

A Biomedical Entity Extraction Pipeline for Oncology Health Records in Portuguese

Hugo Sousa, Arian Pasquali, Alípio Jorge, Catarina Sousa Santos, Mário Amorim Lopes

专题命中生物医学文本：biomedical(title,abstract)

2308.02569 2023-08-08 cs.CL 78%

BioBERT Based SNP-traits Associations Extraction from Biomedical Literature

Mohammad Dehghani, Behrouz Bokharaeian, Zahra Yazdanparast

专题命中生物医学文本：biomedical(title,abstract)

1912.07886 2023-08-08 math.NA cs.NA 78%

Reduced order methods for parametrized non-linear and time dependent optimal flow control problems, towards applications in biomedical and environmental sciences

Maria Strazzullo, Zakia Zainib, Francesco Ballarin, Gianluigi Rozza

专题命中生物医学文本：biomedical(title,abstract)

2304.04762 2023-08-03 physics.med-ph cond-mat.mtrl-sci cs.CE cs.NA math.NA 78%

Phase-field modeling of pitting and mechanically-assisted corrosion of Mg alloys for biomedical applications

S. Kovacevic, W. Ali, E. Martínez-Pañeda, J. LLorca

专题命中生物医学文本：biomedical(title,abstract)

2308.00157 2023-08-02 cs.CL 78%

Boosting Adverse Drug Event Normalization on Social Media: General-Purpose Model Initialization and Biomedical Semantic Text Similarity Benefit Zero-Shot Linking in Informal Contexts

François Remy, Simone Scaboro, Beatrice Portelli

专题命中生物医学文本：biomedical(title,abstract)

2307.13631 2023-07-26 cs.CL 78%

Contributions to the Improvement of Question Answering Systems in the Biomedical Domain

Mourad Sarrouti

专题命中生物医学文本：biomedical(title,abstract)

Comments Doctoral thesis

2110.05006 2023-07-18 cs.CL 78%

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

Benyou Wang, Qianqian Xie, Jiahuan Pei, Zhihong Chen, Prayag Tiwari, Zhao Li, Jie fu

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted in ACM Computing Surveys

2304.08763 2023-07-17 cs.CL 78%

A Survey for Biomedical Text Summarization: From Pre-trained to Large Language Models

Qianqian Xie, Zheheng Luo, Benyou Wang, Sophia Ananiadou

专题命中生物医学文本：biomedical(title,abstract)

Comments 30 pages, 5 figures

2307.06439 2023-07-14 cs.CL cs.AI 78%

Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events

Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon

专题命中生物医学文本：biomedical(title,abstract)

2307.04412 2023-07-11 cs.CL 78%

Enhancing Biomedical Text Summarization and Question-Answering: On the Utility of Domain-Specific Pre-Training

Dima Galat, Marian-Andrei Rizoiu

专题命中生物医学文本：biomedical(title,abstract)

2306.17649 2023-07-11 cs.CL 78%

Biomedical Language Models are Robust to Sub-optimal Tokenization

Bernal Jiménez Gutiérrez, Huan Sun, Yu Su

专题命中生物医学文本：biomedical(title,abstract)

Comments BioNLP @ ACL 2023

2306.15736 2023-07-06 cs.CL 78%

DMNER: Biomedical Entity Recognition by Detection and Matching

Junyi Bian, Rongze Jiang, Weiqi Zhai, Tianyang Huang, Hong Zhou, Shanfeng Zhu

专题命中生物医学文本：biomedical(title,abstract)

Comments 9 pages content, 2 pages appendix

2307.01137 2023-07-04 cs.CL cs.AI 78%

Exploring the In-context Learning Ability of Large Language Model for Biomedical Concept Linking

Qinyong Wang, Zhenxiang Gao, Rong Xu

专题命中生物医学文本：biomedical(title,abstract)

2307.00266 2023-07-04 cs.CL cs.AI 78%

Hierarchical Pretraining for Biomedical Term Embeddings

Bryan Cai, Sihang Zeng, Yucong Lin, Zheng Yuan, Doudou Zhou, Lu Tian

专题命中生物医学文本：biomedical(title,abstract)

2103.10641 2023-06-27 cs.DL cs.SI 78%

Biomedical Convergence Facilitated by the Emergence of Technological and Informatic Capabilities

Dong Yang, Ioannis Pavlidis, Alexander M. Petersen

专题命中生物医学文本：biomedical(title,abstract)

Comments 12 pages, 4 figures; 8 pages of Supplementary Information

Journal ref Advances in Complex Systems 26(1), 2023. Article 2350003

2306.11189 2023-06-21 cs.CL 78%

BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets

Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu

专题命中生物医学文本：biomedical(title,abstract)

2306.08403 2023-06-16 cs.CL 78%

Building a Corpus for Biomedical Relation Extraction of Species Mentions

Oumaima El Khettari, Solen Quiniou, Samuel Chaffron

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted in BioNLP@ACL 2023

2303.10330 2023-06-06 cs.CL 78%

Exploring Partial Knowledge Base Inference in Biomedical Entity Linking

Hongyi Yuan, Keming Lu, Zheng Yuan

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted by ACL-BioNLP 2023. The first two authors are contributed equally

2306.00665 2023-06-02 cs.CL 78%

Automatic Glossary of Clinical Terminology: a Large-Scale Dictionary of Biomedical Definitions Generated from Ontological Knowledge

François Remy, Thomas Demeester

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted at the BioNLP 2023 workshop

2305.18349 2023-05-31 physics.med-ph physics.bio-ph 78%

Cold plasma treatment for biomedical applications: using aluminum foam to reduce risk while increasing efficacy

Zhitong Chen, Richard Obenchain, Richard E. Wirz

专题命中生物医学文本：biomedical(title,abstract)

2305.18152 2023-05-30 cs.CL 78%

Extrinsic Factors Affecting the Accuracy of Biomedical NER

Zhiyi Li, Shengjie Zhang, Yujie Song, Jungyeul Park

专题命中生物医学文本：biomedical(title,abstract)

2305.15010 2023-05-25 cs.CL 78%

Injecting Knowledge into Biomedical Pre-trained Models via Polymorphism and Synonymous Substitution

Hongbo Zhang, Xiang Wan, Benyou Wang

专题命中生物医学文本：biomedical(title,abstract)

2305.14645 2023-05-25 cs.CL 78%

Iteratively Improving Biomedical Entity Linking and Event Extraction via Hard Expectation-Maximization

Xiaochu Li, Minqian Liu, Zhiyang Xu, Lifu Huang

专题命中生物医学文本：biomedical(title,abstract)

Comments 15 pages, 3 figures, 10 tables

2305.10647 2023-05-19 cs.CL cs.AI cs.IR 78%

BioAug: Conditional Generation based Data Augmentation for Low-Resource Biomedical NER

Sreyan Ghosh, Utkarsh Tyagi, Sonal Kumar, Dinesh Manocha

专题命中生物医学文本：biomedical(title,abstract)

Comments SIGIR 2023

2211.16944 2023-05-17 cs.CL cs.AI 78%

AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning

Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted by Bioinformatics

2305.08787 2023-05-16 cs.CL 78%

Comparing Variation in Tokenizer Outputs Using a Series of Problematic and Challenging Biomedical Sentences

Christopher Meaney, Therese A Stukel, Peter C Austin, Michael Escobar

专题命中生物医学文本：biomedical(title,abstract)

2304.13437 2023-05-11 physics.med-ph 78%

Assessment of sol-gel derived iron oxide substituted 45S5 bioglass-ceramics for biomedical applications

Nitu, Rushikesh R Fopase, Lalit Mohan Pandey, Papori Seal, Jyoti Prasad Borah, Ananthakrishnan Srinivasan

专题命中生物医学文本：biomedical(title)；CT(abstract)

Comments 24 pages, 11 figures

2305.05627 2023-05-10 cs.CL 78%

An Exploration of Encoder-Decoder Approaches to Multi-Label Classification for Legal and Biomedical Text

Yova Kementchedjhieva, Ilias Chalkidis

专题命中生物医学文本：biomedical(title,abstract)

Comments 9 pages, long paper at ACL 2023 Findings

1. 生物医学文本 4507 篇

Computational reproducibility of Jupyter notebooks from biomedical publications

Biomedical Knowledge Graph Embeddings with Negative Statements

A Biomedical Entity Extraction Pipeline for Oncology Health Records in Portuguese

BioBERT Based SNP-traits Associations Extraction from Biomedical Literature

Reduced order methods for parametrized non-linear and time dependent optimal flow control problems, towards applications in biomedical and environmental sciences

Phase-field modeling of pitting and mechanically-assisted corrosion of Mg alloys for biomedical applications

Boosting Adverse Drug Event Normalization on Social Media: General-Purpose Model Initialization and Biomedical Semantic Text Similarity Benefit Zero-Shot Linking in Informal Contexts

Contributions to the Improvement of Question Answering Systems in the Biomedical Domain

Pre-trained Language Models in Biomedical Domain: A Systematic Survey

A Survey for Biomedical Text Summarization: From Pre-trained to Large Language Models

Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events

Enhancing Biomedical Text Summarization and Question-Answering: On the Utility of Domain-Specific Pre-Training

Biomedical Language Models are Robust to Sub-optimal Tokenization

DMNER: Biomedical Entity Recognition by Detection and Matching

Exploring the In-context Learning Ability of Large Language Model for Biomedical Concept Linking

Hierarchical Pretraining for Biomedical Term Embeddings

Biomedical Convergence Facilitated by the Emergence of Technological and Informatic Capabilities

BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets

Building a Corpus for Biomedical Relation Extraction of Species Mentions

Exploring Partial Knowledge Base Inference in Biomedical Entity Linking

Automatic Glossary of Clinical Terminology: a Large-Scale Dictionary of Biomedical Definitions Generated from Ontological Knowledge

Cold plasma treatment for biomedical applications: using aluminum foam to reduce risk while increasing efficacy

Extrinsic Factors Affecting the Accuracy of Biomedical NER

Injecting Knowledge into Biomedical Pre-trained Models via Polymorphism and Synonymous Substitution

Iteratively Improving Biomedical Entity Linking and Event Extraction via Hard Expectation-Maximization

BioAug: Conditional Generation based Data Augmentation for Low-Resource Biomedical NER

AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning

Comparing Variation in Tokenizer Outputs Using a Series of Problematic and Challenging Biomedical Sentences

Assessment of sol-gel derived iron oxide substituted 45S5 bioglass-ceramics for biomedical applications

An Exploration of Encoder-Decoder Approaches to Multi-Label Classification for Legal and Biomedical Text