医学 AI - arXivDaily 专题

2406.20038 2024-07-01 cs.CL 78%

BioMNER: A Dataset for Biomedical Method Entity Recognition

Chen Tang, Bohao Yang, Kun Zhao, Bo Lv, Chenghao Xiao, Frank Guerin, Chenghua Lin

专题命中生物医学文本：biomedical(title,abstract)

2405.13179 2024-06-26 cs.CL 78%

RAG-RLRC-LaySum at BioLaySumm: Integrating Retrieval-Augmented Generation and Readability Control for Layman Summarization of Biomedical Texts

Yuelyu Ji, Zhuochun Li, Rui Meng, Sonish Sivarajkumar, Yanshan Wang, Zeshui Yu, Hui Ji, Yushui Han, Hanyu Zeng, Daqing He

专题命中生物医学文本：biomedical(title,abstract)

2406.12931 2024-06-21 eess.AS cs.CL cs.SD 78%

Automatic Speech Recognition for Biomedical Data in Bengali Language

Shariar Kabir, Nazmun Nahar, Shyamasree Saha, Mamunur Rashid

专题命中生物医学文本：biomedical(title,abstract)

2406.10040 2024-06-17 cs.CL cs.AI 78%

FZI-WIM at SemEval-2024 Task 2: Self-Consistent CoT for Complex NLI in Biomedical Domain

Jin Liu, Steffen Thoma

专题命中生物医学文本：biomedical(title,abstract)

Journal ref The 18th International Workshop on Semantic Evaluation (SemEval-2024)

2310.19975 2024-06-10 cs.CL cs.AI 78%

BioInstruct: Instruction Tuning of Large Language Models for Biomedical Natural Language Processing

Hieu Tran, Zhichao Yang, Zonghai Yao, Hong Yu

专题命中生物医学文本：biomedical(title,abstract)

Comments This article has been accepted for publication in Journal of the American Medical Informatics Association Published by Oxford University Press. https://academic.oup.com/jamia/advance-article-abstract/doi/10.1093/jamia/ocae122/7687618

2405.15134 2024-05-28 cs.CL 78%

Efficient Biomedical Entity Linking: Clinical Text Standardization with Low-Resource Techniques

Akshit Achara, Sanand Sasidharan, Gagan N

专题命中生物医学文本：biomedical(title,abstract)

2405.15122 2024-05-27 cs.CL 78%

Generalizable and Scalable Multistage Biomedical Concept Normalization Leveraging Large Language Models

Nicholas J Dobbins

专题命中生物医学文本：biomedical(title,abstract)

2405.11941 2024-05-21 cs.CL 78%

Biomedical Entity Linking for Dutch: Fine-tuning a Self-alignment BERT Model on an Automatically Generated Wikipedia Corpus

Fons Hartendorp, Tom Seinen, Erik van Mulligen, Suzan Verberne

专题命中生物医学文本：biomedical(title,abstract)

Comments Published in the CL4Health workshop on Patient-oriented language processing @ LREC-COLING 2024

2311.17330 2024-05-15 cs.CL 78%

Biomedical knowledge graph-optimized prompt generation for large language models

Karthik Soman, Peter W Rose, John H Morris, Rabia E Akbas, Brett Smith, Braian Peetoom, Catalina Villouta-Reyes, Gabriel Cerono, Yongmei Shi, Angela Rizk-Jackson, Sharat Israni, Charlotte A Nelson, Sui Huang, Sergio E Baranzini

专题命中生物医学文本：biomedical(title,abstract)

Comments 29 pages, 5 figures, 1 table, 1 supplementary file

2405.07500 2024-05-14 cs.IR cs.AI cs.CL 78%

PromptLink: Leveraging Large Language Models for Cross-Source Biomedical Concept Linking

Yuzhang Xie, Jiaying Lu, Joyce Ho, Fadi Nahab, Xiao Hu, Carl Yang

专题命中生物医学文本：biomedical(title,abstract)

Journal ref Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval (Short-Paper Track), 2024

2005.07202 2024-05-08 cs.CL 78%

Pre-training technique to localize medical BERT and enhance biomedical BERT

Shoya Wada, Toshihiro Takeda, Shiro Manabe, Shozo Konishi, Jun Kamohara, Yasushi Matsumura

专题命中生物医学文本：biomedical(title,abstract)

Comments We made the pre-trained weights of ouBioBERT and the source code for fine-tuning freely available at https://github.com/sy-wada/blue_benchmark_with_transformers

2310.18463 2024-04-30 cs.CL 78%

Benchingmaking Large Langage Models in Biomedical Triple Extraction

Mingchen Li, Huixue Zhou, Rui Zhang

专题命中生物医学文本：biomedical(title,abstract)

Comments this is the onging work

2404.00152 2024-04-24 cs.CL 78%

On-the-fly Definition Augmentation of LLMs for Biomedical NER

Monica Munnangi, Sergey Feldman, Byron C Wallace, Silvio Amir, Tom Hope, Aakanksha Naik

专题命中生物医学文本：biomedical(title,abstract)

Comments To appear at NAACL 2024 (Main)

2309.13061 2024-04-24 cs.CL cs.CY 78%

Applying BioBERT to Extract Germline Gene-Disease Associations for Building a Knowledge Graph from the Biomedical Literature

Armando D. Diaz Gonzalez, Kevin S. Hughes, Songhui Yue, Sean T. Hayes

专题命中生物医学文本：biomedical(title,abstract)

Comments 10 pages

Journal ref The 7th International Conference on Information System and Data Mining (ICISDM2023-ACM), Atlanta, USA, May 2023

2404.09206 2024-04-16 cs.CL 78%

DKE-Research at SemEval-2024 Task 2: Incorporating Data Augmentation with Generative Models and Biomedical Knowledge to Enhance Inference Robustness

Yuqi Wang, Zeqiang Wang, Wei Wang, Qi Chen, Kaizhu Huang, Anh Nguyen, Suparna De

专题命中生物医学文本：biomedical(title,abstract)

2404.08654 2024-04-16 cs.CL cs.AI 78%

Optimal path for Biomedical Text Summarization Using Pointer GPT

Hyunkyung Han, Jaesik Choi

专题命中生物医学文本：biomedical(title,abstract)

Comments 3 pages, 3 figures

Journal ref KSC2023

2307.09683 2024-04-10 cs.IR cs.AI cs.DL 78%

PubMed and Beyond: Biomedical Literature Search in the Age of Artificial Intelligence

Qiao Jin, Robert Leaman, Zhiyong Lu

专题命中生物医学文本：biomedical(title,abstract)

Comments 27 pages, 6 figures, 36 tools

Journal ref eBioMedicine, 2024

2404.04259 2024-04-09 physics.soc-ph 78%

The prominent and heterogeneous gender disparities in scientific novelty: evidence from biomedical doctoral theses

Meijun Liu, Zihan Xie, Alex Jie Yang, Chao Yu, Jian Xu, Ying Ding, Yi Bu

专题命中生物医学文本：biomedical(title,abstract)

2306.15550 2024-04-04 cs.CL cs.AI 78%

CamemBERT-bio: Leveraging Continual Pre-training for Cost-Effective Models on French Biomedical Data

Rian Touchent, Laurent Romary, Eric de la Clergerie

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted to LREC-COLING 2024

2404.01072 2024-04-02 cs.DL 78%

How biomedical papers accumulated their clinical citations: A large-scale retrospective analysis based on PubMed

Xin Li, Xuli Tang, Wei Lu

专题命中生物医学文本：biomedical(title,abstract)

2304.02496 2024-03-29 cs.CL cs.AI 78%

Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification

Shan Chen, Yingya Li, Sheng Lu, Hoang Van, Hugo JWL Aerts, Guergana K. Savova, Danielle S. Bitterman

专题命中生物医学文本：biomedical(title,abstract)

Comments 28 pages, 2 tables and 4 figures. Submitting for review

2403.18421 2024-03-28 cs.CL cs.AI 78%

BioMedLM: A 2.7B Parameter Language Model Trained On Biomedical Text

Elliot Bolton, Abhinav Venigalla, Michihiro Yasunaga, David Hall, Betty Xiong, Tony Lee, Roxana Daneshjou, Jonathan Frankle, Percy Liang, Michael Carbin, Christopher D. Manning

专题命中生物医学文本：biomedical(title,abstract)

Comments 23 pages

2403.17363 2024-03-27 cs.CL 78%

Extracting Biomedical Entities from Noisy Audio Transcripts

Nima Ebadi, Kellen Morgan, Adrian Tan, Billy Linares, Sheri Osborn, Emma Majors, Jeremy Davis, Anthony Rios

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted to LREC-COLING 2024

2312.08274 2024-03-27 cs.CL cs.AI 78%

High-throughput Biomedical Relation Extraction for Semi-Structured Web Articles Empowered by Large Language Models

Songchi Zhou, Sheng Yu

专题命中生物医学文本：biomedical(title,abstract)

2403.12386 2024-03-20 cs.CL cs.AI 78%

Pipelined Biomedical Event Extraction Rivaling Joint Learning

Pengchao Wu, Xuefeng Li, Jinghang Gu, Longhua Qian, Guodong Zhou

专题命中生物医学文本：biomedical(title,abstract)

2311.11608 2024-03-06 cs.CL cs.AI 78%

Taiyi: A Bilingual Fine-Tuned Large Language Model for Diverse Biomedical Tasks

Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin

专题命中生物医学文本：biomedical(title,abstract)

Journal ref Journal of the American Medical Informatics Association, 2024, ocae037

2402.16689 2024-02-27 cs.CL cs.AI 78%

Adaptation of Biomedical and Clinical Pretrained Models to French Long Documents: A Comparative Study

Adrien Bazoge, Emmanuel Morin, Beatrice Daille, Pierre-Antoine Gourraud

专题命中生物医学文本：biomedical(title,abstract)

2402.12352 2024-02-20 cs.CL cs.IR 78%

Graph-Based Retriever Captures the Long Tail of Biomedical Knowledge

Julien Delile, Srayanta Mukherjee, Anton Van Pamel, Leonid Zhukov

专题命中生物医学文本：biomedical(title,abstract)

Comments 11 pages, 4 figures

2304.04590 2024-02-16 cs.IR cs.CL 78%

LADER: Log-Augmented DEnse Retrieval for Biomedical Literature Search

Qiao Jin, Ashley Shin, Zhiyong Lu

专题命中生物医学文本：biomedical(title,abstract)

Comments SIGIR 2023

2402.05116 2024-02-13 cs.CL cs.DL cs.IR 78%

Quantifying Similarity: Text-Mining Approaches to Evaluate ChatGPT and Google Bard Content in Relation to BioMedical Literature

Jakub Klimczak, Ahmed Abdeen Hamed

专题命中生物医学文本：biomedical(title,abstract)

Comments 15 pages, 10 figures, 4 tables; and 1 algorithm

1. 生物医学文本 4507 篇

BioMNER: A Dataset for Biomedical Method Entity Recognition

RAG-RLRC-LaySum at BioLaySumm: Integrating Retrieval-Augmented Generation and Readability Control for Layman Summarization of Biomedical Texts

Automatic Speech Recognition for Biomedical Data in Bengali Language

FZI-WIM at SemEval-2024 Task 2: Self-Consistent CoT for Complex NLI in Biomedical Domain

BioInstruct: Instruction Tuning of Large Language Models for Biomedical Natural Language Processing

Efficient Biomedical Entity Linking: Clinical Text Standardization with Low-Resource Techniques

Generalizable and Scalable Multistage Biomedical Concept Normalization Leveraging Large Language Models

Biomedical Entity Linking for Dutch: Fine-tuning a Self-alignment BERT Model on an Automatically Generated Wikipedia Corpus

Biomedical knowledge graph-optimized prompt generation for large language models

PromptLink: Leveraging Large Language Models for Cross-Source Biomedical Concept Linking

Pre-training technique to localize medical BERT and enhance biomedical BERT

Benchingmaking Large Langage Models in Biomedical Triple Extraction

On-the-fly Definition Augmentation of LLMs for Biomedical NER

Applying BioBERT to Extract Germline Gene-Disease Associations for Building a Knowledge Graph from the Biomedical Literature

DKE-Research at SemEval-2024 Task 2: Incorporating Data Augmentation with Generative Models and Biomedical Knowledge to Enhance Inference Robustness

Optimal path for Biomedical Text Summarization Using Pointer GPT

PubMed and Beyond: Biomedical Literature Search in the Age of Artificial Intelligence

The prominent and heterogeneous gender disparities in scientific novelty: evidence from biomedical doctoral theses

CamemBERT-bio: Leveraging Continual Pre-training for Cost-Effective Models on French Biomedical Data

How biomedical papers accumulated their clinical citations: A large-scale retrospective analysis based on PubMed

Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification

BioMedLM: A 2.7B Parameter Language Model Trained On Biomedical Text

Extracting Biomedical Entities from Noisy Audio Transcripts

High-throughput Biomedical Relation Extraction for Semi-Structured Web Articles Empowered by Large Language Models

Pipelined Biomedical Event Extraction Rivaling Joint Learning

Taiyi: A Bilingual Fine-Tuned Large Language Model for Diverse Biomedical Tasks

Adaptation of Biomedical and Clinical Pretrained Models to French Long Documents: A Comparative Study

Graph-Based Retriever Captures the Long Tail of Biomedical Knowledge

LADER: Log-Augmented DEnse Retrieval for Biomedical Literature Search

Quantifying Similarity: Text-Mining Approaches to Evaluate ChatGPT and Google Bard Content in Relation to BioMedical Literature