医学 AI - arXivDaily 专题

2408.03871 2024-10-23 cs.CL cs.AI 78%

Large Language Models for Biomedical Text Simplification: Promising But Not There Yet

Zihao Li, Samuel Belkadi, Nicolo Micheletti, Lifeng Han, Matthew Shardlow, Goran Nenadic

专题命中生物医学文本：biomedical(title,abstract)

Comments Extended system report for PLABA-2023. arXiv admin note: substantial text overlap with arXiv:2309.13202

2407.06292 2024-10-23 cs.CL cs.AI cs.DL 78%

Hybrid X-Linker: Automated Data Generation and Extreme Multi-label Ranking for Biomedical Entity Linking

Pedro Ruas, Fernando Gallego, Francisco J. Veredas, Francisco M. Couto

专题命中生物医学文本：biomedical(title,abstract)

Comments This work has been submitted to the IEEE for possible publication

2410.12856 2024-10-18 cs.CL cs.AI 78%

Optimized Biomedical Question-Answering Services with LLM and Multi-BERT Integration

Cheng Qian, Xianglong Shi, Shanshan Yao, Yichen Liu, Fengming Zhou, Zishu Zhang, Junaid Akram, Ali Braytee, Ali Anaissi

专题命中生物医学文本：biomedical(title,abstract)

Comments 10 pages, 12 figures, accepted and to be published in the proceedings of 2024 IEEE International Conference on Data Mining Workshops (ICDMW)

2406.11258 2024-10-17 cs.CL 78%

SeRTS: Self-Rewarding Tree Search for Biomedical Retrieval-Augmented Generation

Minda Hu, Licheng Zong, Hongru Wang, Jingyan Zhou, Jingjing Li, Yichen Gao, Kam-Fai Wong, Yu Li, Irwin King

专题命中生物医学文本：biomedical(title,abstract)

Comments This work has been accepted by EMNLP 2024

2405.12701 2024-10-16 cs.CL cs.AI 78%

OLAPH: Improving Factuality in Biomedical Long-form Question Answering

Minbyul Jeong, Hyeon Hwang, Chanwoong Yoon, Taewhoo Lee, Jaewoo Kang

专题命中生物医学文本：biomedical(title,abstract)

2410.11590 2024-10-16 cs.CY cs.AI 78%

Towards a Healthy AI Tradition: Lessons from Biology and Biomedical Science

Simon Kasif

专题命中生物医学文本：biomedical(title,abstract)

2410.11550 2024-10-16 cs.AI cs.CL 78%

Y-Mol: A Multiscale Biomedical Knowledge-Guided Large Language Model for Drug Development

Tengfei Ma, Xuan Lin, Tianle Li, Chaoyi Li, Long Chen, Peng Zhou, Xibao Cai, Xinyu Yang, Daojian Zeng, Dongsheng Cao, Xiangxiang Zeng

专题命中生物医学文本：biomedical(title,abstract)

Comments 12 pages, Under Review

2402.12372 2024-10-15 cs.CL 78%

HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools

Mario Sänger, Samuele Garda, Xing David Wang, Leon Weber-Genzel, Pia Droop, Benedikt Fuchs, Alan Akbik, Ulf Leser

专题命中生物医学文本：biomedical(title,abstract)

Journal ref Bioinformatics, Volume 40, Number 10, 2024, btae564, Oxford University Press

2304.13012 2024-10-10 cs.DL 78%

Bibliometric Data Fusion for Biomedical Information Retrieval

Timo Breuer, Christin Katharina Kreutz, Philipp Schaer, Dirk Tunger

专题命中生物医学文本：biomedical(title,abstract)

Comments 10 pages + references, conference paper accepted at JCDL'23

Journal ref Proceedings of 2023 ACM/IEEE Joint Conference on Digital Libraries (JCDL)

2410.00183 2024-10-02 stat.ME 78%

Generalised mixed effects models for changepoint analysis of biomedical time series data

Mark B. Fiecas, Kathryn R. Cullen, Rebecca Killick

专题命中生物医学文本：biomedical(title,abstract)

2305.04928 2024-08-27 cs.CL cs.AI cs.IR 78%

From Zero to Hero: Harnessing Transformers for Biomedical Named Entity Recognition in Zero- and Few-shot Contexts

Miloš Košprdić, Nikola Prodanović, Adela Ljajić, Bojana Bašaragin, Nikola Milošević

专题命中生物医学文本：biomedical(title,abstract)

Comments Collaboration between Bayer Pharma R&D and Serbian Institute for Artificial Intelligence Research and Development. Artificial Intelligence in Medicine (2024)

2408.09998 2024-08-20 math.OC 78%

A new formulation for the collection and delivery problem of biomedical specimen

Luis Aurelio Rocha, Alena Otto, Marc Goerigk

专题命中生物医学文本：biomedical(title,abstract)

Comments This work has been submitted for possible publication

2408.05545 2024-08-15 cs.CL cs.AI 78%

Multi-layer Sequence Labeling-based Joint Biomedical Event Extraction

Gongchi Chen, Pengchao Wu, Jinghang Gu, Longhua Qian, Guodong Zhou

专题命中生物医学文本：biomedical(title,abstract)

Comments 13 pages, 3 figures, accepted by NLPCC2024

2407.17638 2024-08-13 cs.CL 78%

Time Matters: Examine Temporal Effects on Biomedical Language Models

Weisi Liu, Zhe He, Xiaolei Huang

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted to AMIA 2024 Annual Symposium

2302.09246 2024-08-07 physics.med-ph hep-ph physics.ins-det 78%

Positronium Physics and Biomedical Applications

Steven D. Bass, Sebastiano Mariazzi, Pawel Moskal, Ewa Stepien

专题命中生物医学文本：biomedical(title)；pathology(abstract)

Comments Colloquium, 23 pages, preprint of article in Reviews of Modern Physics

Journal ref Rev. Mod. Phys. 95 (2023), 021002

2404.03598 2024-08-06 cs.CL 78%

Intent Detection and Entity Extraction from BioMedical Literature

Ankan Mullick, Mukur Gupta, Pawan Goyal

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted to CL4Health LREC-COLING 2024

2403.16303 2024-07-30 cs.DL cs.AI cs.CL cs.SI 78%

Large Language Models in Biomedical and Health Informatics: A Review with Bibliometric Analysis

Huizi Yu, Lizhou Fan, Lingyao Li, Jiayan Zhou, Zihui Ma, Lu Xian, Wenyue Hua, Sijia He, Mingyu Jin, Yongfeng Zhang, Ashvin Gandhi, Xin Ma

专题命中生物医学文本：biomedical(title,abstract)

Comments 62 pages, 9 figures, 5 tables

2407.10086 2024-07-22 cs.CL cs.AI 78%

Rapid Biomedical Research Classification: The Pandemic PACT Advanced Categorisation Engine

Omid Rohanian, Mohammadmahdi Nouriborji, Olena Seminog, Rodrigo Furst, Thomas Mendy, Shanthi Levanita, Zaharat Kadri-Alabi, Nusrat Jabin, Daniela Toale, Georgina Humphreys, Emilia Antonio, Adrian Bucher, Alice Norton, David A. Clifton

专题命中生物医学文本：biomedical(title,abstract)

2407.12888 2024-07-19 cs.CL cs.AI 78%

Explainable Biomedical Hypothesis Generation via Retrieval Augmented Generation enabled Large Language Models

Alexander R. Pelletier, Joseph Ramirez, Irsyad Adam, Simha Sankar, Yu Yan, Ding Wang, Dylan Steinecke, Wei Wang, Peipei Ping

专题命中生物医学文本：biomedical(title,abstract)

2407.12626 2024-07-18 cs.CL 78%

Domain-specific or Uncertainty-aware models: Does it really make a difference for biomedical text classification?

Aman Sinha, Timothee Mickus, Marianne Clausel, Mathieu Constant, Xavier Coubez

专题命中生物医学文本：biomedical(title,abstract)

Comments BioNLP 2024

2407.08940 2024-07-16 cs.CL 78%

Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation

Biqing Qi, Kaiyan Zhang, Kai Tian, Haoxiang Li, Zhang-Ren Chen, Sihang Zeng, Ermo Hua, Hu Jinfang, Bowen Zhou

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted to COLM 2024. This is an extended version of the paper at arXiv:2311.05965

2407.06779 2024-07-10 cs.CL 78%

Using Pretrained Large Language Model with Prompt Engineering to Answer Biomedical Questions

Wenxin Zhou, Thuy Hang Ngo

专题命中生物医学文本：biomedical(title,abstract)

Comments Submitted to Conference and Labs of the Evaluation Forum (CLEF) 2024 CEUR-WS

2307.05131 2024-07-10 cs.CL 78%

Overview of BioASQ 2023: The eleventh BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Salvador Lima López, Eulália Farré-Maduell, Luis Gasco, Martin Krallinger, Georgios Paliouras

专题命中生物医学文本：biomedical(title,abstract)

Comments 24 pages, 12 tables, 3 figures. CLEF2023. arXiv admin note: text overlap with arXiv:2210.06852

Journal ref CLEF 2023. Lecture Notes in Computer Science, vol 14163. Springer, Cham

2210.06852 2024-07-10 cs.CL cs.AI cs.IR 78%

Overview of BioASQ 2022: The tenth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

Anastasios Nentidis, Georgios Katsimpras, Eirini Vandorou, Anastasia Krithara, Antonio Miranda-Escalada, Luis Gasco, Martin Krallinger, Georgios Paliouras

专题命中生物医学文本：biomedical(title,abstract)

Comments 25 pages, 14 tables, 4 figures. arXiv admin note: substantial text overlap with arXiv:2106.14885

Journal ref Experimental IR Meets Multilinguality, Multimodality, and Interaction. CLEF 2022. Lecture Notes in Computer Science, vol 13390. Springer, Cham

2407.06011 2024-07-09 cs.CL cs.AI 78%

Igea: a Decoder-Only Language Model for Biomedical Text Generation in Italian

Tommaso Mario Buonocore, Simone Rancati, Enea Parimbelli

专题命中生物医学文本：biomedical(title,abstract)

Comments 6 pages, 1 figure, 3 tables

2407.05480 2024-07-09 cs.CL 78%

Biomedical Nested NER with Large Language Model and UMLS Heuristics

Wenxin Zhou

专题命中生物医学文本：biomedical(title,abstract)

Comments Submitted to CEUR-WS for the BioNNE task of BioASQ Lab in Conference and Labs of the Evaluation Forum (CLEF) 2024 as a working note

2407.05015 2024-07-09 cs.CL cs.AI 78%

How do you know that? Teaching Generative Language Models to Reference Answers to Biomedical Questions

Bojana Bašaragin, Adela Ljajić, Darija Medvecki, Lorenzo Cassano, Miloš Košprdić, Nikola Milošević

专题命中生物医学文本：biomedical(title,abstract)

Comments Accepted at BioNLP Workshop 2024, colocated with ACL 2024

2407.02719 2024-07-04 cs.CL 78%

Boosting Biomedical Concept Extraction by Rule-Based Data Augmentation

Qiwei Shao, Fengran Mo, Jian-Yun Nie

专题命中生物医学文本：biomedical(title,abstract)

2407.02626 2024-07-04 cs.DB 78%

The text2term tool to map free-text descriptions of biomedical terms to ontologies

Rafael S. Gonçalves, Jason Payne, Amelia Tan, Carmen Benitez, Jamie Haddock, Robert Gentleman

专题命中生物医学文本：biomedical(title,abstract)

2407.00466 2024-07-02 cs.CL cs.AI 78%

BioKGBench: A Knowledge Graph Checking Benchmark of AI Agent for Biomedical Science

Xinna Lin, Siqi Ma, Junjie Shan, Xiaojing Zhang, Shell Xu Hu, Tiannan Guo, Stan Z. Li, Kaicheng Yu

专题命中生物医学文本：biomedical(title,abstract)

1. 生物医学文本 4504 篇

Large Language Models for Biomedical Text Simplification: Promising But Not There Yet

Hybrid X-Linker: Automated Data Generation and Extreme Multi-label Ranking for Biomedical Entity Linking

Optimized Biomedical Question-Answering Services with LLM and Multi-BERT Integration

SeRTS: Self-Rewarding Tree Search for Biomedical Retrieval-Augmented Generation

OLAPH: Improving Factuality in Biomedical Long-form Question Answering

Towards a Healthy AI Tradition: Lessons from Biology and Biomedical Science

Y-Mol: A Multiscale Biomedical Knowledge-Guided Large Language Model for Drug Development

HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools

Bibliometric Data Fusion for Biomedical Information Retrieval

Generalised mixed effects models for changepoint analysis of biomedical time series data

From Zero to Hero: Harnessing Transformers for Biomedical Named Entity Recognition in Zero- and Few-shot Contexts

A new formulation for the collection and delivery problem of biomedical specimen

Multi-layer Sequence Labeling-based Joint Biomedical Event Extraction

Time Matters: Examine Temporal Effects on Biomedical Language Models

Positronium Physics and Biomedical Applications

Intent Detection and Entity Extraction from BioMedical Literature

Large Language Models in Biomedical and Health Informatics: A Review with Bibliometric Analysis

Rapid Biomedical Research Classification: The Pandemic PACT Advanced Categorisation Engine

Explainable Biomedical Hypothesis Generation via Retrieval Augmented Generation enabled Large Language Models

Domain-specific or Uncertainty-aware models: Does it really make a difference for biomedical text classification?

Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation

Using Pretrained Large Language Model with Prompt Engineering to Answer Biomedical Questions

Overview of BioASQ 2023: The eleventh BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

Overview of BioASQ 2022: The tenth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

Igea: a Decoder-Only Language Model for Biomedical Text Generation in Italian

Biomedical Nested NER with Large Language Model and UMLS Heuristics

How do you know that? Teaching Generative Language Models to Reference Answers to Biomedical Questions

Boosting Biomedical Concept Extraction by Rule-Based Data Augmentation

The text2term tool to map free-text descriptions of biomedical terms to ontologies

BioKGBench: A Knowledge Graph Checking Benchmark of AI Agent for Biomedical Science