医学 AI

Delving into LLM-assisted writing in biomedical publications through excess vocabulary

Dmitry Kobak, Rita González-Márquez, Emőke-Ágnes Horvát, Jan Lause

机构 * Hertie Institute for AI in Brain Health, University of Tübingen, Germany（人工智能与脑健康赫尔蒂研究所、图宾根大学，德国） ； Northwestern University, Evanston, Illinois, USA（西北大学，埃文斯顿，伊利诺伊州，美国） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments v5: Reverting to v3

Journal ref Science Advances, 2 Jul 2025, Vol. 11, No. 27

Quantum Neural Networks for Propensity Score Estimation and Survival Analysis in Observational Biomedical Studies

Vojtěch Novák, Ivan Zelinka, Lenka Přibylová, Lubomír Martínek

机构 * Department of Computer Science, Faculty of Electrical Engineering and Computer science, VSB-Technical University of Ostrava（计算机科学系，电气工程与计算机科学学院，VSB技术大学奥斯特拉瓦） ； VSB-Technical University of Ostrava（VSB技术大学奥斯特拉瓦） ； IT4Innovations National Supercomputing Center, VSB - Technical University of Ostrava（IT4Innovations国家超级计算中心，VSB技术大学奥斯特拉瓦） ； Department of Applied Mathematics, Faculty of Electrical Engineering and Computer science, VSB-Technical University of Ostrava（应用数学系，电气工程与计算机科学学院，VSB技术大学奥斯特拉瓦） ； Department of Surgical Studies, Faculty of Medicine, University of Ostrava（外科研究系，医学院，奥斯特拉瓦大学） ； Department of Surgery, University Hospital Ostrava（外科系，奥斯特拉瓦大学医院） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

On the Performance of Cyber-Biomedical Features for Intrusion Detection in Healthcare 5.0

Pedro H. Lui, Lucas P. Siqueira, Juliano F. Kazienko, Vagner E. Quincozes, Silvio E. Quincozes, Daniel Welfer

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 12 pages, 7 figures, conference

PubMed knowledge graph 2.0: Connecting papers, patents, and clinical trials in biomedical science

Jian Xu, Chao Yu, Jiawei Xu, Vetle I. Torvik, Jaewoo Kang, Mujeen Sung, Min Song, Yi Bu, Ying Ding

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 32 pages, 6 figures, 28 tables

Journal ref Sci Data 12, 1018 (2025)

JEBS: A Fine-grained Biomedical Lexical Simplification Task

William Xia, Ishita Unde, Brian Ondov, Dina Demner-Fushman

机构 * Tufts University（塔夫茨大学） ； Johns Hopkins University（约翰霍普金斯大学） ； Yale University（耶鲁大学） ； National Library of Medicine（国家医学图书馆） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 13 pages, 2 figures, to be published in Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics

BioClinical ModernBERT: A State-of-the-Art Long-Context Encoder for Biomedical and Clinical NLP

Thomas Sounack, Joshua Davis, Brigitte Durieux, Antoine Chaffin, Tom J. Pollard, Eric Lehman, Alistair E. W. Johnson, Matthew McDermott, Tristan Naumann, Charlotta Lindvall

专题命中 生物医学文本 ：biomedical(title,abstract)

A New Lifetime Distribution: Exponentiated Exponential-Pareto-HalfNormal Mixture Model for Biomedical Applications

Oriyomi Ahmad Hassan, Aisha Tunrayo Maradesa, Abdulazeez Toyosi Alabi, Oyejide Surajudeen Salam, Ajani Busari, Akinwale Victor Famotire, Habeeb Abiodun Afolabi, Solomon Adeleke, Abayomi Ayodele Akomolafe

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 22 pages, 9 figures

BioHopR: A Benchmark for Multi-Hop, Multi-Answer Reasoning in Biomedical Domain

Yunsoo Kim, Yusuf Abdulle, Honghan Wu

机构 * UCL（伦敦大学学院） ； King’s College London（伦敦国王学院） ； University of Glasgow（格拉斯哥大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Improving Automatic Evaluation of Large Language Models (LLMs) in Biomedical Relation Extraction via LLMs-as-the-Judge

Md Tahmid Rahman Laskar, Israt Jahan, Elham Dolatabadi, Chun Peng, Enamul Hoque, Jimmy Huang

机构 * York University（约克大学） ； Vector Institute Toronto（多伦多向量研究所） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Accepted at ACL 2025 (Main Conference)

DeepRAG: Integrating Hierarchical Reasoning and Process Supervision for Biomedical Multi-Hop QA

Yuelyu Ji, Hang Zhang, Shiven Verma, Hui Ji, Chun Li, Yushui Han, Yanshan Wang

机构 * Department of Information Science, University of Pittsburgh（信息科学系，匹兹堡大学） ； Department of Biomedical Informatics, University of Pittsburgh（生物医学信息学系，匹兹堡大学） ； Department of Health Information Management and ISP, University of Pittsburgh（健康信息管理与信息科学系，匹兹堡大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Query-driven Document-level Scientific Evidence Extraction from Biomedical Studies

Massimiliano Pronesti, Joao Bettencourt-Silva, Paul Flanagan, Alessandra Pascale, Oisin Redmond, Anya Belz, Yufang Hou

机构 * First Author Affiliation（第一作者机构） ； Second Author Affiliation（第二作者机构） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Accepted at ACL 2025 Main Conference

Focused digital cohort selection from social media using the metric backbone of biomedical knowledge graphs

Ziqi Guo, Jack Felag, Jordan C. Rozum, Rion Brattig Correia, Xuan Wang, Luis M. Rocha

专题命中 生物医学文本 ：biomedical(title,abstract)

Distilling Closed-Source LLM's Knowledge for Locally Stable and Economic Biomedical Entity Linking

Yihao Ai, Zhiyuan Ning, Weiwei Dai, Pengfei Wang, Yi Du, Wenjuan Cui, Kunpeng Liu, Yuanchun Zhou

机构 * Computer Network Information Center, Chinese Academy of Sciences（中国科学院计算机网络信息中心） ； University of Chinese Academy of Sciences（中国科学院大学） ； Changsha Aier Eye Hospital（长沙爱尔眼科医院） ； Portland State University（波特兰州立大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Accepted by ICIC 2025

Scaling Up Biomedical Vision-Language Models: Fine-Tuning, Instruction Tuning, and Multi-Modal Learning

Cheng Peng, Kai Zhang, Mengxian Lyu, Hongfang Liu, Lichao Sun, Yonghui Wu

专题命中 生物医学文本 ：biomedical(title,abstract)

BioDSA-1K: Benchmarking Data Science Agents for Biomedical Research

Zifeng Wang, Benjamin Danek, Jimeng Sun

机构 * University of Illinois Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Bridge2AI: Building A Cross-disciplinary Curriculum Towards AI-Enhanced Biomedical and Clinical Care

John Rincon, Alexander R. Pelletier, Destiny Gilliland, Wei Wang, Ding Wang, Baradwaj S. Sankar, Lori Scott-Sheldon, Samson Gebreab, William Hersh, Parisa Rashidi, Sally Baxter, Wade Schulz, Trey Ideker, Yael Bensoussan, Paul C. Boutros, Alex A. T. Bui, Colin Walsh, Karol E. Watson, Peipei Ping

专题命中 生物医学文本 ：biomedical(title,abstract)

GLiNER-BioMed: A Suite of Efficient Models for Open Biomedical Named Entity Recognition

Anthony Yazdani, Ihor Stepanov, Douglas Teodoro

机构 * Department of Radiology and Medical Informatics, Faculty of Medicine, University of Geneva（日内瓦大学医学院放射学与医学信息学系） ； Knowledgator Engineering（Knowledgator工程） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Can Frontier LLMs Replace Annotators in Biomedical Text Mining? Analyzing Challenges and Exploring Solutions

Yichong Zhao, Susumu Goto

机构 * The University of Tokyo（东京大学） ； Graduate School of Frontier Sciences（前沿科学研究生院） ； Department of Computational Biology and Medical Sciences（计算生物学与医学科学系） ； Database Center for Life Science（生命科学数据库中心） ； Joint Support-Center for Data Science Research（数据科学研究联合支持中心） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Plasmonic Janus particles: A perspective on optical manipulation and biomedical applications

Alemayehu Nana Koya, Anastasiia Sapunova, Nageswar Reddy Sanamreddy, Yanqiu Zou, Qifei Ma, Domna Kotsifak, Huaizhou Jin, Shangzhong Jin, Qing Huo Liu, Paolo Vavassori, Denis Garoli

专题命中 生物医学文本 ：biomedical(title,abstract)

Mapping Biomedical Ontology Terms to IDs: Effect of Domain Prevalence on Prediction Accuracy

Thanh Son Do, Daniel B. Hier, Tayo Obafemi-Ajayi

机构 * Computer Science Department（计算机科学系） ； Missouri State University（密苏里州立大学） ； Kummer Institute Center for AI and AS（Kummer研究所人工智能与自动系统中心） ； Missouri University of Science & Technology（密苏里科技大学） ； Cooperative Engineering Program（合作工程计划） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Presented at 2025 IEEE Conference on Artificial Intelligence (CAI). Santa Clara, CA. May 5, 2025

Journal ref 2025 IEEE Conference on Artificial Intelligence (CAI)

Streamlining Biomedical Research with Specialized LLMs

Linqing Chen, Weilei Wang, Yubin Xia, Wentao Wu, Peng Xu, Zilong Bai, Jie Fang, Chaobo Xu, Ran Hu, Licong Xu, Haoran Hua, Jing Sun, Hanmeng Zhong, Jin Liu, Tian Qiu, Haowen Liu, Meng Hu, Xiuwen Li, Fei Gao, Yong Gu, Tao Shi, Chaochao Wang, Jianping Lu, Cheng Sun, Yixin Wang, Shengjie Yang, Yuancheng Li, Lu Jin, Lisha Zhang, Fu Bian, Zhongkai Ye, Lidong Pei, Changyang Tu

专题命中 生物医学文本 ：biomedical(title,abstract)

Journal ref Proceedings of the 31st International Conference on Computational Linguistics: System Demonstrations,p9--19,2025

Can We Edit LLMs for Long-Tail Biomedical Knowledge?

Xinhao Yi, Jake Lever, Kevin Bryson, Zaiqiao Meng

专题命中 生物医学文本 ：biomedical(title,abstract)

UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition

Aidan Mannion, Thierry Chevalier, Didier Schwab, Lorraine Geouriot

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Addition of v2 experiments

Biomedical Question Answering via Multi-Level Summarization on a Local Knowledge Graph

Lingxiao Guan, Yuanhao Huang, Jie Liu

专题命中 生物医学文本 ：biomedical(title,abstract)

Do LLMs Surpass Encoders for Biomedical NER?

Motasem S Obeidat, Md Sultan Al Nahian, Ramakanth Kavuluru

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Accepted to appear in IEEE ICHI 2025

WHERE and WHICH: Iterative Debate for Biomedical Synthetic Data Augmentation

Zhengyi Zhao, Shubo Zhang, Bin Liang, Binyang Li, Kam-Fai Wong

专题命中 生物医学文本 ：biomedical(title,abstract)

A Retrieval-Augmented Knowledge Mining Method with Deep Thinking LLMs for Biomedical Research and Clinical Support

Yichun Feng, Jiawei Wang, Ruikun He, Lu Zhou, Yixue Li

专题命中 生物医学文本 ：biomedical(title,abstract)

From Knowledge Generation to Knowledge Verification: Examining the BioMedical Generative Capabilities of ChatGPT

Ahmed Abdeen Hamed, Alessandro Crimi, Magdalena M. Misiak, Byung Suk Lee

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 28 pages, 6 figures, In Review with a Cell Press Journal

HILGEN: Hierarchically-Informed Data Generation for Biomedical NER Using Knowledgebases and Large Language Models

Yao Ge, Yuting Guo, Sudeshna Das, Swati Rajwal, Selen Bozkurt, Abeed Sarker

专题命中 生物医学文本 ：biomedical(title,abstract)

Entangled Relations: Leveraging NLI and Meta-analysis to Enhance Biomedical Relation Extraction

William Hogan, Jingbo Shang

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 17 pages, 1 figure