医学 AI

Measuring Risk of Bias in Biomedical Reports: The RoBBR Benchmark

Jianyou Wang, Weili Cao, Longtian Bao, Youze Zheng, Gil Pasternak, Kaicheng Wang, Xiaoyue Wang, Ramamohan Paturi, Leon Bergen

机构 * Laboratory for Emerging Intelligence（新兴智能实验室） ； University of California, San Diego（加州大学圣地亚哥分校） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Published at EMNLP 2025 (Main)

Combining Evidence and Reasoning for Biomedical Fact-Checking

Mariano Barone, Antonio Romano, Giuseppe Riccio, Marco Postiglione, Vincenzo Moscato

机构 * University of Naples Federico II（那不勒斯费德里科二世大学） ； Northwestern University（西北大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Proceedings of the 48th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2025

Combating Biomedical Misinformation through Multi-modal Claim Detection and Evidence-based Verification

Mariano Barone, Antonio Romano, Giuseppe Riccio, Marco Postiglione, Vincenzo Moscato

机构 * University of Naples Federico II（那不勒斯费迪里奇二世大学） ； Northwestern University（西北大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Journal ref SIGIR '25: Proceedings of the 48th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2025

RanAT4BIE: Random Adversarial Training for Biomedical Information Extraction

Jian Chen, Shengyi Lv, Leilei Su

机构 * Department of Data Science and Big Data Technology, Hainan University, Haikou 570228, China（数据科学与大数据技术学院，海南大学，海口570228，中国） ； Department of Mathematics, Hainan University, Haikou 570228, China（数学学院，海南大学，海口570228，中国） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Accepted for publication at the International Joint Conference on Neural Networks (IJCNN) 2025

BIBERT-Pipe on Biomedical Nested Named Entity Linking at BioASQ 2025

Chunyu Li, Xindi Zheng, Siqi Liu

机构 * Individual Researcher（独立研究者） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Demonstrating Narrative Pattern Discovery from Biomedical Literature

Hermann Kroll, Pascal Sackhoff, Bill Matthias Thang, Christin Katharina Kreutz, Wolf-Tilo Balke

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Accepted Demo at TPDL2025, 10 pages, 3 figures

BALI: Enhancing Biomedical Language Representations through Knowledge Graph and Language Model Alignment

Andrey Sakhovskiy, Elena Tutubalina

机构 * AIRI ； Sber AI ； ISP RAS Research Center for Trusted AI（俄罗斯科学院信息与系统研究所可信人工智能研究中心） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 9 pages, 1 figure, published in "The 48th International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR 2025)"

Journal ref Proceedings of the 48th International ACM SIGIR Conference on Research and Development in Information Retrieval (2025). Association for Computing Machinery, 1152-1164

Quantized Large Language Models in Biomedical Natural Language Processing: Evaluation and Recommendation

Zaifu Zhan, Shuang Zhou, Min Zeng, Kai Yu, Meijia Song, Xiaoyi Chen, Jun Wang, Yu Hou, Rui Zhang

机构 * Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN, USA（电气与计算机工程系，明尼苏达大学，明尼阿波利斯，MN，美国） ； Division of Computational Health Sciences, Department of Surgery, University of Minnesota, Minneapolis, MN, USA（计算健康科学 division，外科系，明尼苏达大学，明尼阿波利斯，MN，美国） ； School of Nursing, University of Minnesota, Minneapolis, MN, USA（护理学院，明尼苏达大学，明尼阿波利斯，MN，美国） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 11 pages, 7 figures

Materials and Design Strategies of Fully 3D Printed Biodegradable Wireless Devices for Biomedical Applications

Ju-Yong Lee, Jooik Jeon, Joo-Hyeon Park, Se-Hun Kang, Yea-seol Park, Min-Sung Chae, Jieun Han, Kyung-Sub Kim, Jae-Hwan Lee, Sung-Geun Choi, Sun-Young Park, Young-Seo Kim, Yoon-Nam Kim, Seung-Min Lee, Myung-Kyun Choi, Jun Min Moon, Joon-Woo Kim, Seung-Kwon Seol, Jeonghyun Kim, Jahyun Koo, Ju-Young Kim, Woo-Byoung Kim, Kang-Sik Lee, Jung Keun Hyun, Seung-Kyun Kang

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 50 pages, 7 figures

EvidenceMap: Learning Evidence Analysis to Unleash the Power of Small Language Models for Biomedical Question Answering

Chang Zong, Jian Wan, Siliang Tang, Lei Zhang

机构 * Zhejiang University of Science and Technology（浙江理工大学） ； Zhejiang University（浙江大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 13 pages, 6 figures

Robustness tests for biomedical foundation models should tailor to specifications

R. Patrick Xian, Noah R. Baker, Tom David, Qiming Cui, A. Jay Holmgren, Stefan Bauer, Madhumita Sushil, Reza Abbasi-Asl

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 17 pages, accepted version with SI, repo at https://github.com/RealPolitiX/bfm-robust

Journal ref npj Digital Medicine 8, 557 (2025)

Overview of BioASQ 2025: The Thirteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Martin Krallinger, Miguel Rodríguez-Ortega, Eduard Rodriguez-López, Natalia Loukachevitch, Andrey Sakhovskiy, Elena Tutubalina, Dimitris Dimitriadis, Grigorios Tsoumakas, George Giannakoulas, Alexandra Bekiaridou, Athanasios Samaras, Giorgio Maria Di Nunzio, Nicola Ferro, Stefano Marchesin, Marco Martinelli, Gianmaria Silvello, Georgios Paliouras

机构 * Barcelona Supercomputing Center, Barcelona, Spain（巴塞罗那超级计算中心，巴塞罗那，西班牙） ； Moscow State University, Russia（莫斯科国立大学，俄罗斯） ； Artificial Intelligence Research Institute, Russia（人工智能研究 institute，俄罗斯） ； Kazan Federal University, Russia（卡扎诺夫联邦大学，俄罗斯） ； SberAI & Skoltech, Russia（SberAI 与 Skoltech，俄罗斯） ； Aristotle University of Thessaloniki, Greece（亚里士多德大学，希腊） ； Northwell Health, USA（Northwell Health，美国） ； University of Padua, Italy（帕多瓦大学，意大利） ； Archimedes, Athena Research Center, Greece（阿基米德，亚特兰蒂斯研究中心，希腊） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 26 pages, 17 tables, 1 figure

Overview of BioASQ 2024: The twelfth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Salvador Lima-López, Eulàlia Farré-Maduell, Martin Krallinger, Natalia Loukachevitch, Vera Davydova, Elena Tutubalina, Georgios Paliouras

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 25 pages, 16 tables, 1 figure

Journal ref Experimental IR Meets Multilinguality, Multimodality, and Interaction. CLEF 2024. Lecture Notes in Computer Science, vol 14959. Springer, Cham

ReProCon: Scalable and Resource-Efficient Few-Shot Biomedical Named Entity Recognition

Jeongkyun Yoo, Nela Riddle, Andrew Hoblitzell

机构 * Ain Hospital（AIN医院） ； Indiana University（印第安纳大学） ； Purdue University（普渡大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

What are the limits to biomedical research acceleration through general-purpose AI?

Konstantin Hebenstreit, Constantin Convalexius, Stephan Reichl, Stefan Huber, Christoph Bock, Matthias Samwald

专题命中 生物医学文本 ：biomedical(title,abstract)

Pub-Guard-LLM: Detecting Retracted Biomedical Articles with Reliable Explanations

Lihu Chen, Shuojie Fu, Gabriel Freedman, Cemre Zor, Guy Martin, James Kinross, Uddhav Vaghela, Ovidiu Serban, Francesca Toni

机构 * Imperial College London（伦敦帝国学院） ； Amazon Web Services（亚马逊网络服务） ； National Health Service（国家健康服务） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments long paper under review

Data-Efficient Biomedical In-Context Learning: A Diversity-Enhanced Submodular Perspective

Jun Wang, Zaifu Zhan, Qixin Zhang, Mingquan Lin, Meijia Song, Rui Zhang

机构 * Division of Computational Health Sciences, Department of Surgery（计算健康科学系，外科系） ； School of Nursing（护理学院） ； College of Computing and Data Science（计算与数据科学学院） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Retrieval augmented generation based dynamic prompting for few-shot biomedical named entity recognition using large language models

Yao Ge, Sudeshna Das, Yuting Guo, Abeed Sarker

机构 * Department of Biomedical Informatics, School of Medicine, Emory University（生物医学信息学系，医学院，埃默里大学） ； Department of Computer Science, Emory University（计算机科学系，埃默里大学） ； National Library of Medicine, National Institutes of Health（国家医学图书馆，国立卫生研究院） ； Department of Biomedical Engineering, Georgia Institute of Technology and Emory University（生物医学工程系，佐治亚理工学院和埃默里大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 31 pages, 4 figures, 15 tables

EvidenceBench: A Benchmark for Extracting Evidence from Biomedical Papers

Jianyou Wang, Weili Cao, Kaicheng Wang, Xiaoyue Wang, Ashish Dalvi, Gino Prasad, Qishan Liang, Hsuan-lin Her, Ming Wang, Qin Yang, Gene W. Yeo, David E. Neal, Maxim Khan, Christopher D. Rosin, Ramamohan Paturi, Leon Bergen

机构 * Laboratory for Emerging Intelligence, University of California, San Diego（新兴智能实验室，加州大学圣地亚哥分校） ； Elsevier（埃塞洋） ； Department of Cellular and Molecular Medicine, University of California, San Diego（细胞与分子医学系，加州大学圣地亚哥分校） ； Sichuan Cancer Hospital & Institute（四川癌症医院与研究所） ； The Third People’s Hospital of Chengdu（成都第三人民医院） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Published at Conference on Language Modeling (COLM) 2025

Proof-of-Useful-Work Blockchain for Trustworthy Biomedical Hyperdimensional Computing

Jinghao Wen, Dongning Ma, Sizhe Zhang, Hasshi Sudler, Xun Jiao

专题命中 生物医学文本 ：biomedical(title,abstract)

"It looks sexy but it's wrong." Tensions in creativity and accuracy using genAI for biomedical visualization

Roxanne Ziman, Shehryar Saharan, Gaël McGill, Laura Garrison

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 11 pages, 3 figures. Accepted to IEEE VIS 2025 Conference

OpenMed NER: Open-Source, Domain-Adapted State-of-the-Art Transformers for Biomedical NER Across 12 Public Datasets

Maziyar Panahi

机构 * CNRS Paris, France（法国巴黎国家科学研究中心） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Harnessing Collective Intelligence of LLMs for Robust Biomedical QA: A Multi-Model Approach

Dimitra Panou, Alexandros C. Dimopoulos, Manolis Koubarakis, Martin Reczko

机构 * Department of Informatics ； Kapodistrian University of Athens, Greece ； Institute for Fundamental Biomedical Science, Biomedical Sciences Research Center "Alexander Fleming", Greece ； Department of Informatics \& Telematics, School of Digital Technology, Harokopio University, Greece ； Archimedes, Athena Research Center, Greece 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Learning from Negative Samples in Biomedical Generative Entity Linking

Chanhwi Kim, Hyunjae Kim, Sihyeon Park, Jiwoo Lee, Mujeen Sung, Jaewoo Kang

机构 * Korea University（韩国大学） ； Kyung Hee University（庆熙大学） ； AIGEN Sciences（AIGEN公司） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments ACL 2025 (Findings)

PHAX: A Structured Argumentation Framework for User-Centered Explainable AI in Public Health and Biomedical Sciences

Bahar İlgen, Akshat Dubey, Georges Hattab

机构 * Center for Artificial Intelligence in Public Health Research (ZKI-PH), Robert Koch-Institut, Nordufer 20, Berlin, 13353, Germany（公共健康人工智能研究中心（ZKI-PH）、罗伯特· Koch研究所） ； Department of Mathematics and Computer Science, Freie Universität Berlin, Arnimallee 14, Berlin, 14195, Germany（数学与计算机科学系、柏林自由大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Preprint. Under review

How Important is Domain Specificity in Language Models and Instruction Finetuning for Biomedical Relation Extraction?

Aviv Brokman, Ramakanth Kavuluru

机构 * University of Kentucky, Lexington, KY USA（肯塔基大学） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments A version of this paper has appeared in the proceedings of NLDB 2025 with a slightly different title. The corresponding DOI is also listed below in the metadata

Effective Multi-Task Learning for Biomedical Named Entity Recognition

João Ruano, Gonçalo M. Correia, Leonor Barreiros, Afonso Mendes

机构 * Priberam Labs（Priberam实验室） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments Accepted at the 24th BioNLP workshop (ACL2025), 15 pages, 3 figures

Lessons from the TREC Plain Language Adaptation of Biomedical Abstracts (PLABA) track

Brian Ondov, William Xia, Kush Attal, Ishita Unde, Jerry He, Dina Demner-Fushman

机构 * Yale School of Medicine（耶鲁医学院） ； Tufts University（塔夫茨大学） ； NYU Grossman School of Medicine（纽约大学格罗斯曼医学院） ； Johns Hopkins University（约翰霍普金斯大学） ； Georgia Institute of Technology（佐治亚理工学院） ； National Institute of Standards（国家标准研究院） ； National Library of Medicine（国家医学图书馆） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Error-Aware Curriculum Learning for Biomedical Relation Classification

Sinchani Chakraborty, Sudeshna Sarkar, Pawan Goyal

机构 * Department of Computer Science and Engineering（计算机科学与工程系） ； Indian Institute of Technology Kharagpur（印度理工学院Khargapur） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

Comments 16 pages, 2 figures

Novel multifunctional plasmonic fiber probe: Enabling plasmonic heating and SERS sensing for biomedical applications

Muhammad Fayyaz Kashif, Di Zheng, Linda Piscopo, Liam Collard, Antonio Balena, Huatian Hu, Daniele Riccio, Francesco Tantussi, Francesco De Angelis, Massimo de Vittorio, Ferruccio Pisanello

专题命中 生物医学文本 ：biomedical(title,abstract)