医学 AI

Can NLI Provide Proper Indirect Supervision for Low-resource Biomedical Relation Extraction?

Jiashu Xu, Mingyu Derek Ma, Muhao Chen

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 16 pages; ACL 2023; code in https://github.com/luka-group/NLI_as_Indirect_Supervision

A Generic Framework for Hidden Markov Models on Biomedical Data

Richard Fechner, Jens Dörpinghaus, Robert Rockenfeller, Jennifer Faber

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs

Jackson Callaghan, Colleen H. Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, Eric Zhou, Rohan Juneja, Yao Yao, Madhumita Narayan, Kristina Hanspers, Ayushi Agrawal, Alexander R. Pico, Chunlei Wu, Andrew I. Su

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Principles and Guidelines for Sharing Biomedical Data for Secondary Use: The University of Chicago Perspective

Robert L. Grossman, Maryellen L. Giger, Julie A. Johnson, Jeremy D. Marks, Jessica P. Ridgway, Julian Solway, Walter M. Stadler

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 6 pages

A large dataset of software mentions in the biomedical literature

Ana-Maria Istrate, Donghui Li, Dario Taraborelli, Michaela Torkar, Boris Veytsman, Ivana Williams

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Quantum processor-inspired machine learning in the biomedical sciences

Richard Y. Li, Sharvari Gujja, Sweta R. Bajaj, Omar E. Gamel, Nicholas Cilfone, Jeffrey R. Gulcher, Daniel A. Lidar, Thomas W. Chittenden

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Journal ref Patterns 2, 100246 (2021)

Recommendations to enhance rigor and reproducibility in biomedical research

Jaqueline J. Brito, Jun Li, Jason H. Moore, Casey S. Greene, Nicole A. Nogoy, Lana X. Garmire, Serghei Mangul

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Lyra -- containerized microservices for browsing shared biomedical data

Michael Huttner, Claudio Lottaz, Christian Kohler, Rainer Spang

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 4 pages, 3 figures. Webpage https://lymmml.spang-lab.de, Github: https://github.com/mhuttner/lyra-api-server

Knowledge synthesis from 100 million biomedical documents augments the deep expression profiling of coronavirus receptors

AJ Venkatakrishnan, Arjun Puranik, Akash Anand, David Zemmour, Xiang Yao, Xiaoying Wu, Ramakrishna Chilaka, Dariusz K. Murakowski, Kristopher Standish, Bharathwaj Raghunathan, Tyler Wagner, Enrique Garcia-Rivera, Hugo Solomon, Abhinav Garg, Rakesh Barve, Anuli Anyanwu-Ofili, Najat Khan, Venky Soundararajan

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 5 figures

Sensitivity analysis methods in the biomedical sciences

George Qian, Adam Mahdi

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 7 figures

Integrating Machine Learning and Multiscale Modeling: Perspectives, Challenges, and Opportunities in the Biological, Biomedical, and Behavioral Sciences

Mark Alber, Adrian Buganza Tepole, William Cannon, Suvranu De, Salvador Dura-Bernal, Krishna Garikipati, George Karniadakis, William W. Lytton, Paris Perdikaris, Linda Petzold, Ellen Kuhl

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Journal ref npj Digital Medicine 2 (2019) 115

A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications

Finn Kuusisto, John Steill, Zhaobin Kuang, James Thomson, David Page, Ron Stewart

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Journal ref AMIA Joint Summits on Translational Science Proceedings (2017) 166-174

Deep Contextualized Biomedical Abbreviation Expansion

Qiao Jin, Jinling Liu, Xinghua Lu

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments BioNLP 2019

Mathematical Discovery of Natural Laws in Biomedical Sciences: A New Methodology

Leonid Hanin

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 15 pages, 1 embedded figure, 34 references

Network Medicine in the age of biomedical big data

Abhijeet R. Sonawane, Scott T. Weiss, Kimberly Glass, Amitabh Sharma

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments Review Article

Serverless computing provides on-demand high performance computing for biomedical research

Dimitar Kumanov, Ling-Hong Hung, Wes Lloyd, Ka Yee Yeung

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Centrifugal Microfluidics for Biomedical Applications

Yoon-Kyoung Cho

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments Nobel Symposium 162, Stockholm, Sweden, 2017 arXiv:1712.08369v1 report-id: Nobel162/2017/27

Enumerating consistent subgraphs of directed acyclic graphs: an insight into biomedical ontologies

Yisu Peng, Yuxiang Jiang, Predrag Radivojac

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 18 pages, 6 figures

The evolution and structure of biomedical knowledge on cytochrome P450

David Fajardo-Ortiz, Miguel Lara, Victor M. Castano

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments Three figures and one table

MOLIERE: Automatic Biomedical Hypothesis Generation System

Justin Sybrandt, Michael Shtutman, Ilya Safro

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Multivariate Multiscale Dispersion Entropy of Biomedical Times Series

Hamed Azami, Alberto Fernandez, Javier Escudero

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Bioinformatic Scaling of Allosteric Interactions in Biomedical Isozymes

J. C. Phillips

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 12 pages, 5 figures

Image Mining from Gel Diagrams in Biomedical Publications

Tobias Kuhn, Michael Krauthammer

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Journal ref Proceedings of the 5th International Symposium on Semantic Mining in Biomedicine (SMBM 2012)

Advances in the Biomedical Applications of the EELA Project

Vicente Hernández, Ignacio Blanquer, Gabriel Aparicio, Raul Isea, Juan Luis Chavés, Álvaro Hernández, Henry Ricardo Mora, Manuel Fernández, Alicia Acero, Esther Montes, Rafael Mayo

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 5 pages

Journal ref Proceedings of the NETTAB Conference (2007). Vol. 7, pp. 145-156

Enzymatic AND Logic Gates Operated Under Conditions Characteristic of Biomedical Applications

Dmitriy Melnikov, Guinevere Strack, Jian Zhou, Joshua Ray Windmiller, Jan Halamek, Vera Bocharova, Min-Chieh Chuang, Padmanabhan Santhosh, Vladimir Privman, Joseph Wang, Evgeny Katz

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments PDF, 29 pages

Journal ref J. Phys. Chem. B 114, 12166-12174 (2010)

Pressure sensor-based tongue-placed electrotactile biofeedback for balance improvement - Biomedical application to prevent pressure sores formation and falls

Nicolas Vuillerme, Olivier Chenu, Nicolas Pinsault, Alexandre Moreau-Gaudry, Anthony Fleury, Jacques Demongeot, Yohan Payan

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Journal ref Dans Proceedings - 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society., Lyon : France (2007)

Artificial Tongue-Placed Tactile Biofeedback for perceptual supplementation: application to human disability and biomedical engineering

Nicolas Vuillerme, Olivier Chenu, Alexandre Moreau-Gaudry, Jacques Demongeot, Yohan Payan

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Journal ref Human Machine iNteraction Conference Human'07 (2007) 105-112

Survey of the didemnins: A class of depsipeptide natural products with promising biomedical applications

Jonathan L. Belof

专题命中 生物医学文本 ：biomedical(title,abstract)；分类 q-bio

Comments 6 pages, 4 figures, review paper for a graduate course

Most biomedical publications show signs of LLM-assisted writing

大多数生物医学出版物显示出大语言模型（LLM）辅助写作的迹象

Lena Holzwarth, Rita González-Márquez, Dmitry Kobak

机构 * Hertie Institute for AI in Brain Health, University of Tübingen（蒂宾根大学赫蒂脑健康人工智能研究所） ； Ghent University（根特大学） ； VIB（弗拉芒生物技术研究院） 纠错

专题命中 生物医学文本 ：biomedical(title,abstract)

AI总结 本研究提出基于词频变化的无偏方法估计文本语料库中LLM使用情况，发现到2025年底89%的生物医学论文存在LLM相关词汇过量，讨论部分LLM使用率是方法部分的两倍，相关估计对制定指南政策至关重要。

Biomedical Knowledge Composition: A Software Engineering Perspective

生物医学知识构建：软件工程视角

Natallia Kokash, Adam S. Z. Bellouma, Paola Grosso

专题命中 生物医学文本 ：biomedical(title,abstract)

AI总结 本文从软件工程视角，阐述生物医学知识图谱的核心地位与相关挑战，提出需借鉴Web工程的可组合可复现实践，为生物医学知识基础设施构建提供研究议程。