Brain network is commonly divided into modules for analyzing their functionally segregated roles for group-level analysis in neuroimaging studies. Here, we introduce stochastic modules within brain networks for a robust probabilistic measurement of structural-functional module consistency (SFMC) in a group of subjects. Specifically, a stochastic module can be regarded as the chance of a brain region across subjects potentially being assigned to a group-level sub-network, characterized as an assignment probability for this brain region. This novel method has two advantages for evaluating inhomogeneous modules in brain networks. The first is that it can robustly evaluate the consistency between brain structural and functional modules whose population sizes are not necessary the same, and the second is that it is able to take into account the inter-individual variability of the modules for the groups. Moreover, compared with the conventional structural-functional coupling approach, our stochastic module-based method reveals a more pronounced decline in the coupling between structure and function, indicating stronger developmental reorganization. Our results using the dataset from Baby Connectome Project (BCP) show that the SFMC decreases from 0 to 5 years old, and is greater in primary brain regions, such as visual areas, while lower in more advanced cognitive regions, including those related to attention, control, and default mode network.

Tree-like structures appear in many areas of science, and their shapes can help understand the underlying processes they drive or that give rise to them. By thinking of these structures as geometric graphs in $\mathbb{R}^3$, we gain access to tools from computational geometry and topology to study them. In this paper, we adopt the theory of quadratic forms to measure the directional spread of geometric graphs, and we introduce the hexplot model -- equipped with a metric derived from the Fisher metric on the standard triangle -- to visualize, measure, and collect statistics.

Collective oscillations in neuronal systems often arise from interactions between excitatory and inhibitory populations rather than from recurrent coupling within a single ensemble. Motivated by the coexistence of strongly and partially synchronized regimes in such systems, we study the Kuramoto Sakaguchi model on a bipartite network. Despite its minimal structure, the model exhibits rich collective dynamics, including both continuous and discontinuous transitions from full synchrony to partial synchrony (PS). In the PS regime, global oscillations fail to entrain one of the two populations, whose oscillators display quasiperiodic dynamics with an average frequency that can significantly deviate from that of the global field, as observed in neuronal networks. We show that this PS state constitutes an example of self-organized quasiperiodicity, arising here in the canonical Kuramoto Sakaguchi model despite its purely linear global coupling.

Human cognition depends on large scale communication constrained by white matter architecture. Although weak connections are abundant in mammalian connectomes, they have long been treated as noise and downweighted because of tractography uncertainty in the human brain, and their relevance to human cognition and large scale functional organization remains unresolved. Across multiple datasets and tractography pipelines, we show that, when tractography derived connectivity weights are interpreted through a nonlinear weighting framework, weak connections make measurable contributions to cognitive prediction, functional connectivity simulation, and structure-function coupling. These effects are selective: nonlinear weighting improves the prediction of general cognitive ability and memory more than that of crystallized intelligence or processing speed, consistent with the notion that weak connections preferentially expand the modal repertoire of brain networks to enhance both large scale integration and fine grained segregation, thereby supporting the functional balance essential for diverse cognitive abilities. Importantly, these effects are replicated in a reliability aware connectome generated by integrating two post tractography filtering methods, in which preserving weak links consistently outperforms conventional thresholding strategies. Finally, we show that weak connections contain functionally informative subsets organized along systems level and transcriptomic gradients. In particular, a specific class of weak connections, predominantly linking visual and motor systems with limbic regions and characterized by negative gene coexpression, exerts a disproportionately large influence on brain function.

Learning, inference, memory, and emergence in biological and artificial systems are often described using disparate theoretical frameworks. Here we develop a cognitive field theory in which cognition is described as a collective nonequilibrium phenomenon governed by the geometry and collective spectrum of a learned cognitive manifold. Starting from a stochastic cognitive-field equation on an adaptive Riemannian manifold, we derive an effective cognitive field theory incorporating nonlocal memory kernels and retarded self-energy feedback. The learned cognitive geometry generates a complex collective spectrum characterized by the time-scale density of states $ρ(λ,ω)$, whose relaxation and circulation sectors govern memory persistence and temporal coherence. Integrating out latent slow collective modes produces non-Markovian memory feedback that renormalizes the cognitive forgetting gap $r_{\rm cog}$, enhances collective susceptibility, and drives the system toward a protected near-critical regime characterized by long-time contextual persistence and scale-free temporal organization. The observable cognitive field emerges as a macroscopic order parameter, $ϕ=Ae^{iψ}$, whose amplitude encodes collective cognitive organization and whose phase encodes temporal coherence across distributed collective modes. Within this framework, learning organizes cognitive geometry, cognitive geometry generates a collective spectrum, and the resulting memory feedback stabilizes a memory-dressed cognitive field. The theory provides a unified dynamical description of learning, memory, inference, selfhood, and emergent intelligence in terms of the infrared organization of collective cognitive dynamics.

Resting-state EEG provides a non-invasive view of spontaneous brain activity, but extracting meaningful patterns is often limited by scarce high-quality data and reliance on manually engineered features. Generative adversarial networks (GANs) can synthesize neural signals and learn transferable representations directly from raw data, a dual capability that remains underexplored in EEG research. Here, we introduce REST-GAN, a GAN-based framework for resting-state EEG that combines adversarial training with an auxiliary self-supervised reconstruction objective to support signal synthesis and unsupervised feature extraction. Although trained only on raw time-domain signals, without explicit frequency-domain or sensor-topographic supervision, the generated time series reproduced key temporal, spectral, and connectivity properties of real EEG. In band-power feature space, generated samples showed high precision and recall across eyes-open and eyes-closed conditions (EO: 0.91/0.67; EC: 0.87/0.65), while group-average spectral coherence matrices showed low mean absolute differences from real data across frequency bands (~0.01-0.03). The representations learned by the model's critic transferred to independent resting-state demographic classification tasks, outperforming models trained directly on raw EEG and showing competitive performance relative to a recent EEG foundation model, while requiring substantially less training data and computational resources. These findings highlight a computationally efficient, architecture-driven strategy in which generative models serve not only as EEG signal generators, but also as unsupervised feature extractors. This approach may support more data-efficient EEG analysis while reducing reliance on manual feature engineering. The implementation code for REST-GAN is available at: https://github.com/Yeganehfrh/REST-GAN.