Can DFT-trained neural network potentials reproduce structure, solvation, and water-exchange properties in aqueous magnesium solutions?
DFT训练的神经网络势能否重现镁水溶液中的结构、溶剂化和水交换性质?
Sebastian Falkner, Pablo Montero de Hijes, Christoph Dellago, Nadine Schwierz
AI总结 开发并系统评估基于revPBE-D3/zd和revPBE0-D3/zd数据的MACE神经网络势,发现其能准确再现水合结构、扩散和交换动力学,但溶剂化自由能显著低估实验值,表明需显式长程静电处理。
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镁离子在许多生物过程中起着至关重要的作用,但在生物分子模拟中仍然难以建模。尽管付出了大量的科学努力,经典力场未能同时再现关键的结构、热力学和动力学溶液性质,这很可能是因为它们无法显式考虑量子多体效应。在这里,我们开发并系统评估了用于水MgCl$_2$溶液的MACE神经网络势(NNPs),这些势基于revPBE-D3/zd和revPBE0-D3/zd密度泛函理论参考数据训练,并评估它们再现广泛实验溶液性质的能力,包括第一水合壳的结构、扩散系数、活性导数、水交换速率和机制以及溶剂化自由能。两种NNP都准确地再现了第一水合壳的八面体结构、离子配对性质和扩散系数。将NNP与过渡路径采样和其他增强采样技术相结合,使我们能够捕获Mg$^{2+}$第一水合壳中水交换的罕见事件,揭示了解离交换机制。过渡界面采样得到的交换速率在实验值的一个数量级内,相比经典解离力场有显著改进。相比之下,NNP导出的溶剂化自由能显著低估了实验值,揭示了当前局部NNP架构在描述离子溶剂化热力学方面的局限性。我们的结果表明,DFT训练的NNP可以准确描述Mg$^{2+}$的水合结构、扩散、离子配对和交换动力学,同时强调需要显式长程静电处理以实现与实验离子溶剂化自由能的定量一致。
Magnesium ions play an essential role in many biological processes but remain challenging to model in biomolecular simulations. Despite considerable scientific effort, classical force fields fail to simultaneously reproduce key structural, thermodynamic and kinetic solution properties, likely due to their inability to explicitly account for quantum many-body effects. Here, we develop and systematically benchmark MACE neural network potentials (NNPs) for aqueous MgCl$_2$ solutions trained on revPBE-D3/zd and revPBE0-D3/zd density functional theory reference data and assess their ability to reproduce a broad range of experimental solution properties including the structure of the first hydration shell, diffusion coefficient, activity derivative, water-exchange rate and mechanism as well as solvation free energy. Both NNPs accurately reproduce the octahedral structure of the first hydration shell, ion pairing properties and diffusion coefficients. Combining the NNPs with transition path sampling and other enhanced sampling techniques allows us to capture the rare event of water exchange in the first hydration shell of Mg$^{2+}$ revealing a dissociative exchange mechanism. Transition interface sampling yields exchange rates within one order of magnitude of experiment, representing a substantial improvement over classical dissociative force fields. In contrast, the NNP-derived solvation free energy significantly underestimates the experimental value, revealing a limitation of the present local NNP architectures for describing ion solvation thermodynamics. Our results demonstrate that DFT-trained NNPs can accurately describe Mg$^{2+}$ hydration structure, diffusion, ion pairing, and exchange kinetics, while highlighting the need for explicit long-range electrostatic treatments to achieve quantitative agreement with experimental ion solvation free energies.