A key part of developing large language model (LLM)-powered, automated tutoring tools is student simulation, i.e., using LLMs to role-play as students, which can facilitate tutor model evaluation and training. Existing work mostly focuses on within-dialogue simulation, which lacks context on student knowledge and behavior, partly due to not grounding in past student question-answering or dialogue interactions. In this work, we introduce the task of history-conditioned student simulation, where the goal is to accurately predict student dialogue turns by leveraging information in the student's learning history. We propose a two-component framework in which a profile generator summarizes a student's history and a simulator predicts student turns conditioned on the resulting profile. We train both components with reinforcement learning (RL), yielding profiles optimized for faithful student simulation. We evaluate our method and baselines on the first-of-its-kind real-world dataset of student dialogues and question responses that we collect from a math learning platform. Extensive experiments show that our method significantly outperforms baselines, and demonstrate the importance of history, profiles, and RL training.

Diffusion Transformers have become a powerful backbone for text-to-image generation, but their layered and cross-modal generation process makes safety control fundamentally different from prompt-level filtering or output-level detection. Harmful semantics may be weakly expressed in text representations, progressively bound to visual latents, and finally entangled with rendering dynamics. As a result, safety steering at a fixed layer can be unstable, and a steering mechanism learned from known risks may not transfer reliably to a shifted target risk domain. We propose SafeDIG, a safety steering framework that formulates DiT safety adaptation as position-aware sparse feature transfer. SafeDIG first constructs Sparse Autoencoders over functionally distinct DiT intervention positions and uses robustness-aware pre-training routing to prioritize intervention sites that are expected to remain stable under source-target risk shift. It then separates transferable safety features from domain-specific activation geometry by freezing the SAE encoder as a reusable sparse safety dictionary and adapting only the decoder to the target-domain activation manifold. During inference, SafeDIG combines Blend and Repel operations to steer unsafe activations toward transferred safety manifolds or away from harmful sparse directions. Experiments on FLUX.1 Dev and Stable Diffusion 3.5 Large show that SafeDIG consistently reduces target-domain and overall unsafe generation rates while preserving source-domain safety and image quality.

Anomaly detection aims to identify samples that deviate from the nominal data distribution and is central to many safety-critical applications. However, developing effective anomaly detection methods for categorical, mixed-type, and discrete sequence data remains challenging and relatively underexplored. Masked diffusion models provide a natural way to model such data by learning to recover masked values from the remaining visible context. In this paper, we propose Masked Diffusion for Anomaly Detection (MaskDiff-AD), a forward-only method based on masked diffusion models trained only on nominal data. Given a test sample, MaskDiff-AD constructs anomaly scores from the difficulty of reconstructing randomly masked coordinates, yielding a content-sensitive score that operates directly on discrete state spaces while avoiding reverse-time sampling. We also develop a non-parametric variant of MaskDiff-AD and provide theoretical guarantees by characterizing Type-I and Type-II errors under a fixed detection threshold. Experiments on fourteen categorical and mixed-type tabular datasets from ADBench and UADAD, as well as four text anomaly detection datasets from NLP-ADBench, show that MaskDiff-AD achieves competitive performance against classical, diffusion-based, and recent tabular/text anomaly detection baselines. Notably, MaskDiff-AD achieves the best overall average rank, outperforming all twelve tabular baseline methods.

Video object removal frequently struggles to simultaneously eliminate target objects and their associated physical effects (e.g., smoke, reflections, light, and ripples) in out-of-domain scenarios due to complex spatiotemporal ambiguities. While existing methods primarily rely on spatial masks, they often fail to capture weakly correlated effects, and the potential of explicit textual guidance remains underexplored. Furthermore, a fundamental optimization conflict exists in removal models between high-level semantic generalization and precise pixel-level background preservation. To address these challenges, we propose GenEraser, a novel framework for generalized and high-fidelity video object and effect removal. First, we introduce a Multi-Conditional Mixture-of-Experts (MC-MoE) paired with Bipartite Text guidance to fully exploit the multimodal priors of Diffusion Transformers, significantly enhancing the identification of complex effects. Second, a Learnable Deep ``CFG'' Fusion mechanism (LD-CFG) is developed to adaptively balance the relative dominance of mask and textual conditions across diverse scenarios. Finally, we propose a Decoupled Expert Architecture, comprising a Locator and a Preserver, to mitigate the inherent trade-off between semantic generalization and pixel alignment. Extensive experiments demonstrate that our GenEraser surpasses recent state-of-the-art approaches, achieving significant quantitative improvements (e.g., $2.16$ dB and $1.44$ dB on the ROSE Benchmark and VOR-Eval, respectively) while maintaining exceptionally robust generalization in open-world scenarios. https://cyqii.github.io/GenEraser.github.io/

Automating scientific computing workflows requires more than generating executable code: autonomous systems must also select appropriate computational strategies, implement them faithfully, and ensure that the resulting outcomes remain causally attributable to the decisions that produced them. In multi-agent pipelines, this process is particularly fragile, as small inconsistencies between agent intentions and actions can lead to semantic drift, where the eventually executed procedure no longer reflects the originally selected strategy, thereby corrupting downstream evaluation and adaptation. In this work, motivated by the ATHENA framework (Toscano et al., 2025; Toscano et al., 2026) and the concept of empowerment (Yiu et al., 2025), we introduce a multi-agent framework that combines contextual bandits with structured inter-agent communication and, most importantly, semantic checkpoints that preserve action-outcome fidelity throughout the pipeline. The system integrates specialized large language model (LLM) agents, grounded code generation, and self-healing execution loops within an adaptive decision-making architecture. Interpreting the framework through the lens of empowerment, we show that reliable autonomous learning requires not only identifying high-quality actions, but also preserving the integrity of their propagation across agents. Using sensitivity analysis and uncertainty quantification workflows as representative case studies, we demonstrate that unchecked semantic drift degrades policy learning, whereas the proposed framework improves convergence, robustness, and adaptation to novel problem contexts. These results suggest a broader design principle for scientific multi-agent systems: adaptive decision-making must be coupled with explicit mechanisms that guarantee semantic consistency and reliable information flow across the computational pipeline.

Per-token billing is now the standard pricing model for commercial large language models (LLMs), so the honesty of reported token counts directly affects what users pay. We show that this kind of billing is hard to audit by design: providers hide the model, the tokenizer, and the execution to protect their IP, mitigate jailbreaks, and preserve user privacy, which means an auditor can only inspect proofs the provider supplies. The audit therefore reduces to a consistency check on the provider's own reports. We call this a trust paradox: every audit must trust some artifact, but current frameworks trust exactly the ones a provider has the strongest reason to manipulate. We study three recent token auditing frameworks and show that a provider with ordinary commercial capabilities can systematically inflate billed token counts. In the most permissive setting, hidden reasoning usage can be inflated by 1,469% on average without detection. At current frontier reasoning prices, that turns a \$100 honest bill into roughly a \$1,569 bill on the same query. Even when the user can see the full reasoning string, tokenization ambiguity alone still allows 50.85% over-reporting below the detection threshold. These results suggest the problem is not in any specific auditor but in any audit whose evidence comes from the audited party. Restoring honest billing will require verification that ties reported token counts to evidence the provider does not control, such as trusted execution attestation, cryptographic proofs of inference, or third-party re-execution.

Diffusion models generate highly realistic images but often struggle with precise text-image alignment. While recent post-training methods improve alignment using external rewards or human preference signals, their performance heavily depends on reward quality and does not directly address alignment within the diffusion process itself. Recent reward-free approaches such as SoftREPA demonstrate that optimizing soft text tokens via contrastive learning can effectively improve text-image representation alignment, outperforming standard parameter-efficient fine-tuning baselines. However, the contrastive formulation can excessively penalize negative pairs, which manifests as characteristic failure cases such as over-counting and repetition. To address this issue, we propose a lightweight, reward-free post-training method that refines soft tokens by integrating contrastive alignment guidance directly into the score-matching objective of diffusion models. By assigning alignment directions at the score level, our approach mitigates these limitations and yields more coherent and semantically faithful generations. Experiments show that our method matches SoftREPA while substantially improving its failure cases, achieving over 35% improvement in counting accuracy on the GenEval benchmark. Our method is seamlessly applicable to existing diffusion backbones (SD1.5, SDXL, and SD3), and is complementary to existing RL-based diffusion post-training methods. Project page: https://jaayeon.github.io/AGSM

Large Language Models (LLMs) demonstrate a remarkable capacity to adopt different personas and roles; however, it remains unclear whether they can manifest behavior that adheres to a coherent, human-like value structure. In this work, we draw on established psychological value theory to induce human-like values in LLMs and assess their alignment with patterns observed in human studies. Using validated psychological questionnaires, we conduct large-scale experiments -- over 5 million questions -- to evaluate value structures and value-behavior relationships in leading LLMs and compare them to humans. Our findings reveal strong agreement between value-prompted LLMs and humans across both dimensions. Moreover, incorporating human value distributions enhances population-level simulations with value-induced LLMs. These findings highlight the potential of value-induced LLMs as effective, psychologically grounded tools for simulating human behavior.

Large Audio Language Models (LALMs) expand jailbreak risks from token-level prompting to the full speech perception-to-reasoning pipeline, where unsafe behavior can be induced through semantics, acoustic style, signal artifacts, or internal representations. Existing work studies these risks under heterogeneous threat models and evaluation protocols, making it difficult to compare attack practicality or defense utility. This paper provides a unified taxonomy and a controlled empirical evaluation of LALM jailbreak attacks and defenses. We organize prior work into semantic, acoustic, signal, and embedding-layer attacks; guard-based, training-free, and training-based defenses; and cross-modal, audio-native, and interactive benchmarks. We then evaluate representative attacks and defenses across ten open-source LALMs, measuring not only attack success rate but also benign refusal and latency. Our results show that Acoustic Best-of-N reveals strong worst-case audio-space vulnerabilities, Narrative Framing is an effective low-latency semantic threat, and current defenses trade robustness against benign usability. These findings support cost- and utility-aware evaluation as a necessary complement to success-rate-only LALM safety benchmarks.

Retrieval-augmented generation (RAG) systems expose numerous design choices spanning query rewriting, chunking, retrieval depth, reranking, and context compression. In practice, these choices are often configured through heuristics, hindering systematic evaluation and reproducibility across settings. We argue that this challenge is best formulated as RAG architecture search. To support controlled and reproducible study of this problem, we introduce the RAG Intelligence Search Engine (RAISE), a comprehensive framework and benchmark for RAG hyperparameter optimization, which evaluates optimization methods for RAG pipelines under standardized search spaces and budgets. RAISE implements 13 search algorithms and evaluates them across seven public text and multimodal datasets using three random seeds. Our experiments show that optimization performance is highly task-dependent: methods that perform strongly on one dataset may not generalize consistently across others, cautioning against interpreting aggregate rankings as evidence of universally superior strategies. RAISE provides a common experimental substrate for fair, reproducible, and systematic research on RAG hyperparameter optimization.

Multimodal documents contain diverse elements, such as tables, figures, and layouts, which can complicate retrieval tasks. While current approaches typically combine dense visual embedding models with supervised rerankers to achieve high-precision retrieval, they face inherent limitations. First, the coarse-grained nature of dense embeddings tends to obfuscate explicit semantics, failing to leverage structurally salient information. Second, supervised reranking models suffer from generalization bottlenecks, as their performance heavily relies on domain-specific training data. Furthermore, existing benchmarks often lack diverse assessment dimensions and comprehensive relevance annotations, limiting reliable evaluation. To address these challenges, we propose DocRetriever, a plug-and-play framework. It enhances visual retrieval via a layout-aware sparse embedding technique, enabling effective hybrid encoding without the overhead of optical character recognition (OCR). We also introduce a generalizable reranker that leverages reasoning-augmented demonstrations and optimized sampling to improve accuracy in few-shot settings. Finally, we construct a new benchmark, MultiDocR, to enable more rigorous evaluation. Experiments across diverse benchmarks validate DocRetriever's superiority over state-of-the-art methods.

Positional encoding (PE) underpins how permutation-invariant Transformers represent sequence order, yet how positional information is processed and stored remains poorly understood. Modern PE methods such as RoPE still struggle on tasks such as long-context understanding or retrieval \cite{chen-etal-2025-hope}. Hence, a better understanding of the internal positional mechanism could help design better PE. Building on evidence that positional and semantic signals occupy nearly orthogonal subspaces in trained Transformers, we modify an encoder Transformer to process three explicitly disentangled streams: semantic, absolute positional (AP) and relative positional (RP), and confine the masked-language-modeling (MLM) objective to the semantic stream. This decoupling enables a clean mechanistic study and yields three take-aways. (1) The isolated AP subspace spontaneously collapses into a low-frequency two-dimensional manifold that captures the structure of the document; (2) Attention heads specialize into structure and semantic-oriented groups, with RP exclusively supporting the latter; (3) Standard positional encodings do not robustly retain macroscopic structure: RoPE and RP only weakly encode it, and entangled AP loses it in the final layers under MLM pressure. The disentangled approach preserves positional encoding, which improves linguistic representation on 49 of the 65 linguistic phenomena of the Flash-Holmes probing benchmark.

Supervised Causal Learning (SCL) has shown promise in causal discovery by framing it as a supervised learning problem. However, it suffers from significant out-of-distribution generalization challenges. We reveal three limitations of previous SCL practices: a significant performance gap between synthetic benchmarks and real-world data, fragility to distribution shifts, and failure in compositional generalization, collectively questioning its real-world applicability. To address this, we propose Test-Time Training for Supervised Causal Learning (TTT-SCL), a novel framework that dynamically generates training sets explicitly aligned with any specific test instance. We demonstrate the correlation between TTT-SCL and score-based methods, and design an efficient module for generating training sets based on the classic scoring function. Experiments on synthetic benchmarks, pseudo-real and real-world datasets demonstrate that TTT-SCL significantly outperforms existing SCL and traditional causal discovery methods.

Urban trajectories play a crucial role in modeling urban dynamics and supporting various smart city applications. However, privacy concerns restrict access to large-scale and high-quality trajectory datasets. Trajectory generation provides a promising alternative by synthesizing realistic data to mitigate privacy risks. However, existing methods fail to explicitly capture travel patterns and can only generate fixed-length trajectories under a single condition. To address these limitations, we propose \textbf{HTP}, which \textbf{H}ierarchically generates \textbf{T}ravel patterns first and then generates GPS \textbf{P}oints by using large language models (LLMs), rather than directly generating GPS points. We first design a trajectory-specific residual quantization variational autoencoder (RQ-VAE) that quantizes micro-level GPS trajectories into compact, macro-level travel pattern tokens in a coarse-to-fine manner. These tokens capture rich segment spatial irregularities, such as point density variations caused by traffic conditions. Then, we extend the LLM vocabulary with travel pattern tokens to align trajectory representations with the LLM input, and apply supervised fine-tuning (SFT) to align the LLM with the trajectory generation task, enabling generation of travel pattern sequences under various conditions. Extensive experiments on two real-world datasets show that HTP outperforms the strongest baseline by an average of 29.78\% in terms of generation quality. Our code is available at https://github.com/slzhou-xy/HTP.

Recent work has begun to equip vision-language-action (VLA) policies with explicit intermediate reasoning. In embodied control, however, textual chain-of-thought is a poor fit: irrelevant or weakly textual information can interfere with action prediction, while autoregressive text decoding adds too much latency for real-time closed-loop execution. We present VISUALTHINK-VLA, a visual intermediate-reasoning framework for accurate, low-latency VLA policies. Our bootstrapping philosophy is to guide action with effective visual thinking: VISUALTHINK-VLA bootstraps action prediction through a compact visual-evidence interface that preserves spatial precision while avoiding decoding overhead. Besides, to further improve performance and efficiency, VISUALTHINK-VLA adopts a tailored selective routing mechanism to learn the visual evidence tokens, enabling low-latency inference while preserving high-capacity specialization. We also introduce VisualEvidence-Kit, a supervision-and-audit resource centered on a VisualEvidence-Agent that constructs a 754.7k VLA instructions VisualEvidence-Set for route supervision and counterfactual faithfulness tests. Across multiple benchmarks and real-robot evaluation, VISUALTHINK-VLA achieves the highest success rate on most benchmarks while reducing the multi-second latency of reasoning-augmented baselines to the sub-second regime. For example, on BridgeData V2, it reduces step latency from 8.377,s with ECoT to 0.367,s, achieving a 22.8 times speedup.

Video large language models (Video-LLMs) have demonstrated strong capabilities in video understanding tasks. However, their practical deployment is still hindered by the inefficiency introduced by processing massive amounts of visual tokens. Although recent approaches achieve extremely low token retention ratios while maintaining accuracy comparable to full-token baselines, most of them perform compression only at the late stage of prefilling, leaving the efficiency of the vision encoder unoptimized. In this paper, we first show that vision encoding contributes a large portion to the time-to-first-token (TTFT). Therefore, instead of compressing visual tokens only after the vision encoder, performing compression inside the encoder still leaves substantial room for exploration. Based on this insight, we propose EarlyTom, a training-free token compression framework that performs early-stage visual token compression inside the vision encoder, enabling significantly better TTFT reduction and higher throughput. In addition, we introduce a decoupled spatial token selection strategy that improves the overall compression effectiveness. EarlyTom reduces TTFT by up to 2.65x and FLOPs by up to 61% on a single NVIDIA A100 GPU for the LLaVA-OneVision-7B model, while maintaining accuracy comparable to the full-token baseline. These improvements substantially enhance the practicality of deploying Video-LLMs in real-world production scenarios.

We study two-level autoresearch for cooperation: an outer-loop AI agent autonomously redesigns the inner-loop pipeline of an LLM policy-synthesis system for multi-agent Sequential Social Dilemmas (SSDs). A researcher agent $\mathcal{R}$ (run as a coding agent) reads the inner-loop source code, edits system prompts, feedback functions, helper libraries, and iteration logic, runs evaluations, and decides what to keep, following the autoresearch paradigm. Across two games (Cleanup and Gathering), two policy-synthesizer LLMs, and two welfare objectives (utilitarian efficiency and Rawlsian maximin), the researcher reliably exceeds hand-designed baselines, sharply tightens run-to-run variance, and outperforms prompt-only optimization. The discovered pipelines are objective-dependent: only under maximin does the researcher inject an explicit fairness mechanism into synthesizer pipelines, a class of mechanism that is absent from its own objective-agnostic system prompt and from every efficiency-optimized pipeline. This supports an information-design reading in which the researcher chooses what to reveal to the boundedly rational synthesizer as a function of the welfare objective. Code at https://github.com/vicgalle/autoresearch-social-dilemmas.

Cross-domain multimodal time series forecasting is a challenging task, requiring models to integrate precise numerical comprehension, cross-domain semantic understanding, and effective multimodal fusion. Existing approaches either build Time Series Foundation Models (TSFMs) from scratch or leverage pretrained Large Language Models (LLMs). However, TSFMs often overlook semantic understanding and lack the ability to perform future-oriented semantic reasoning, and LLMs struggle with numerical comprehension and accurate quantitative forecasting. To overcome these limitations, we propose KairosAgent, a novel agentic framework for multimodal time series forecasting, including an LLM-based reasoner and a TSFM-based forecaster. KairosAgent unifies textual reasoning and numerical forecasting by dynamically invoking analytical tools to enhance the numerical understanding and semantic reasoning capabilities of LLMs. The reasoning results are subsequently fused into the TSFM pipeline, enabling more accurate and reliable future predictions. To further improve the reasoning, we curate a large-scale corpus of high-quality trajectories, alongside a reinforcement learning from forecasting paradigm with multi-turn refinement and turn-level credit assignment. Experiments demonstrate that KairosAgent achieves superior zero-shot forecasting performance while maximizing the utility of pretrained LLMs and TSFMs, presenting a promising direction for efficient and interpretable time series agents. The project page is at https://foundation-model-research.github.io/KairosAgent .

We present FRUC, a feed-forward 3D Gaussian splatting framework for dynamic scene reconstruction from uncalibrated collaborative driving views. Existing multi-agent reconstruction frameworks are often hindered by rigid prerequisites, demanding precise spatial calibration and slow per-scene optimization. In this paper, we rethink this task by conceptualizing a distributed multi-vehicle network as a spatio-temporally unstructured ego-centric multi-camera system, where the core challenge lies in enhancing ego-centric occluded geometry through collaboration without degrading the ego's accurately observed visible geometry, while preserving reconstruction efficiency. For efficient reconstruction, FRUC is built upon a visual grounded geometric Transformer backbone to enable one-shot, calibration-free inference from a flexible number of multi-vehicle views. To achieve non-destructive geometric supplementation under uncalibrated cross-agent misalignment, FRUC first introduces an ego-centric causal occlusion field that explicitly derives occlusion evolution as latent priors by modeling agent-wise spatio-temporal correlations. Guided by these occlusion priors, it further formulates cross-agent integration as a deterministic residual denoising process via zero-initialized injection, turning challenging cross-agent fusion into bounded residual learning for robust collaborative blind-spot completion. Through extensive evaluations on the real-world V2XReal and UrbanIng-V2X datasets, FRUC is shown to be a new state-of-the-art for the scene reconstruction of dynamic collaborative driving environments, significantly outperforming existing methods in both rendering quality and efficiency.

Sentence embeddings are a foundational component for semantic search, clustering, classification, and retrieval-augmented generation. This paper presents embeddingmagibu-200m, a Turkish-focused sentence embedding model that produces 768-dimensional L2-normalized vectors and supports an 8,192-token context window, far exceeding the 512-token limit of earlier BERT-based Turkish encoders. Instead of full pretraining, an efficient three-stage adaptation pipeline is introduced: (1) construct a Turkish-optimized multilingual tokenizer with a 131,072 vocabulary by pruning redundant tokens from the teacher's vocabulary and incorporating multilingual tokens via frequency analysis on a 40-language corpus, (2) clone a teacher embedding model while preserving transformer backbone weights and initializing a compatible embedding table for the new vocabulary via mean-composition token mapping, and (3) perform offline embedding distillation from precomputed teacher vectors using a cosine similarity objective over a balanced 40-language Wikipedia corpus. The resulting student model contains approximately 200M parameters and trains in roughly four hours on a single GPU by avoiding online teacher inference during training, at a total cost of $5-$20. Empirically, Pearson/Spearman correlations of 77.55%/77.45% are obtained on STSbTR, surpassing the 300M-parameter teacher model (73.84%/72.92%). On TR-MTEB (26 tasks), a mean score of 63.9% is achieved (7th out of 26 models), providing a competitive cost-quality trade-off with 33% fewer parameters than the teacher. To facilitate reproducibility and downstream use, all artifacts are released including model weights, tokenizer files, precomputed embedding datasets, and open-source cloning and distillation tooling.

To guarantee that an LLM's outputs conform to a specified structure, context-free grammar (CFG) decoding engines force the selection of next tokens that produce strings that conform to a given CFG. While current CFG-constrained decoding engines are highly optimized, the inherent costs arising from the massive per-step search space -- i.e. the entire token vocabulary -- result in intractably high overhead for more complex CFGs: precisely the situation where CFG engines are most useful. In this paper, we introduce CFGzip, an offline technique for compressing the token search space, which massively reduces CFG engine overhead. In experiments, we report latency reduction of up to two orders of magnitude when CFGzip is used with a SoTA grammar engine, yielding an up to 7.5x speedup in total constrained generation time: with CFGzip, constrained decoding is now feasible at scale for complex CFGs.

The adversarial robustness of attributions is a fundamental requirement for reliable explainability in deep learning, yet existing approaches typically rely on computationally expensive explicit regularization. In this work, we show that attribution robustness can arise implicitly from the learning dynamics of standard stochastic gradient descent. We theoretically motivate this effect through connections between parameter-space and input-space curvature, and validate it across architectures, datasets, and attribution methods, with negligible computational overhead. In contrast, we prove that such robustness gains often does not transfer to attention-based attribution under softmax normalization, due to inherent entropy constraints, and we validate this limitation experimentally. Finally, we show that replacing softmax attention with kernel-based attention restores the robustness gains in transformer models. Our results highlight learning dynamics as a principled and practical mechanism for robust explainability, and reveal fundamental limitations of attention-based attribution under normalization.

Multimodal alignment of histopathology encoders with transcriptomic and genomic data has been shown to significantly improve performance in downstream diagnostic tasks. Hematological cytology is unique in that visual single-cell evaluation is often paired with cytogenetics and molecular genetics for blood cancer diagnosis. In this study, we present a framework to align single white blood cell images with chromosomal aberrations (karyotype) and somatic mutations from targeted gene panels. Our training strategy follows a two-stage approach: (i) self-supervised, vision-only pretraining of a transformer aggregator using an iBOT head on a cohort of over 1500 patients, and (ii) genetic alignment via supervised contrastive loss on acute myeloid leukemia patients. Our genetically aligned patient encoder improves hematological diagnostic tasks, outperforming slide-level histopathology foundation models. Additionally, the model provides off-the-shelf retrieval capabilities for diseases and genetic alterations. Incorporating genetic data into patient encoders increases the quality of patient representations, providing a framework that aligns with clinical diagnostic workflows and paves the way for future multimodal hematology-specific AI. The code and model weights are available at https://github.com/marrlab/GenBloom.

The behavior of LLMs does not depend solely on the model itself. Components of the inference system, such as the inference engine, attention backend, and hardware platform, subtly influence how inputs are processed. These components differ in their implementations and thereby induce small numerical deviations across systems when running the same model. While prior work has established the theoretical existence of such deviations, their security implications have remained unexplored. In this paper, we show that these deviations are characteristic of specific components and propagate to observable textual outputs, exposing the inference system to any party that can query the model. Building on this observation, we introduce a fingerprinting method that analyzes the prompt-response behavior of LLMs to identify components of the inference system. Our empirical evaluation demonstrates that the inference engine, attention backend, and underlying hardware platform can be identified reliably, even when the LLM is operated at non-zero temperature. We show that preventing fingerprinting is fundamentally hard, as it would require eliminating numerical differences between hardware and software stacks. We therefore propose partial mitigations and discuss their impact.

We evaluate the climate simulation capabilities of ArchesWeather and ArchesWeatherGen, two machine learning models originally trained for weather forecasting and evaluated up to a 10-day lead time. ArchesWeather is a deterministic model, while ArchesWeatherGen is a probabilistic flow-matching model leveraging ArchesWeather's forecasts, enabling ensemble-based uncertainty quantification. In this work, we adapt these models to act as forced atmospheric models by using additional conditioning on the monthly mean sea surface temperature (SST) and sea ice cover (SIC) as boundary conditions. In particular, we follow the AI Model Intercomparison Project (AIMIP) Phase 1 protocol, which, analogous to the Atmospheric Model Intercomparison Project (AMIP), proposes a standardized experimental setup to evaluate the climate skill of ML-based forced atmospheric models. We present a comprehensive evaluation of both models under these conditions, including comparison against numerical climate models, ablation studies that examine key design choices in the extension, and an analysis of forced versus unforced configurations. Despite being originally developed for weather forecasting, we demonstrate that forced configurations of ArchesWeather and ArchesWeatherGen produce stable long-term climate simulations, have a stable annual cycle, and capture the drift of many climate variables. The models faithfully reproduce ERA5's climatology, large-scale circulations and interannual variability, and they capture the tails of the distributions.

We present a fully convolutional denoising autoencoder (FC-DAE) for denoising two-time intensity-intensity correlation functions ($C_2$) in X-ray photon correlation spectroscopy (XPCS). Unlike conventional denoising autoencoders that are typically restricted to fixed input sizes, the FC-DAE accepts inputs of arbitrary dimensions while preserving correlation structures across diverse dynamical regimes. The model is trained using experimentally derived $C_2$ data collected at NSLS-II beamlines, with data augmentation applied to expand the diversity of the dataset and reduce overfitting. The FC-DAE successfully recovers intricate dynamical features in low signal-to-noise conditions while maintaining structural fidelity. To assess reconstruction reliability, we employ quantitative metrics to evaluate structural fidelity and identify potential model-induced bias. Our results demonstrate that the FC-DAE provides robust denoising performance with high computational efficiency, enabling recovery of XPCS dynamics under photon-limited and low-dose measurement conditions.

Causal interventions in language model representations have largely targeted discrete features, like grammatical number. However, language models must also make use of features that are graded. We introduce a method for causal intervention on continuous variables: given activation vectors paired with a graded target variable, we localize a low-dimensional direction for that variable and use this direction to edit a vectors toward counterfactual target values. We apply this method to a continuous feature that is well-studied in psycholinguistics, namely verb bias (which reflects which syntactic structures tend to follow a given verb). We show that verb bias is causally represented in steering vectors extracted from large language models: counterfactual edits to verb bias systematically shift downstream structural preferences. Verb bias has also previously been linked to in-context learning; in further analyses, we find that steering vectors encode error signals that could drive the error-driven update behavior seen in in-context learning but that these aspects of the steering vectors are not causally used in downstream production. Overall, these results show causal interventions can be applied to continuous variables, though connecting continuous variables to in-context learning remains a challenge.

Marine lead (Pb) and its isotopes are critical tracers for ocean circulation and anthropogenic pollution, yet in-situ observations remain costly and sparse. While vast historical records exist, they lie buried within the unstructured content of academic papers, creating "data silos" inaccessible to comprehensive analysis. Manual extraction is unscalable, while general-purpose Large Language Models (LLMs) lack the necessary domain-specific knowledge, leading to hallucinations and scientifically invalid outputs. To address this, we introduce an expert-guided adaptation approach that enables LLMs to perform rigorous scientific data extraction without fine-tuning. We operationalize this approach through Compass, an LLM agent framework enhanced by a Knowledge Tree co-designed with marine scientists, which decomposes complex tasks into verifiable steps, guiding the agent's reasoning to ensure scientific validity. Deploying Compass across a corpus of over 230,000 relevant open-access papers, we successfully extract 3,751 previously unincorporated Pb records. This effort establishes the largest integrated marine Pb database to date. Beyond standard metrics, Compass demonstrates superior reliability through multi-layered validation, achieving 92% accuracy as confirmed through expert manual verification. The newly integrated data expand coverage in previously under-sampled regions such as the East China Sea and the Southern Ocean, providing an enriched data foundation for future scientific discoveries. We release an interactive visualization platform to facilitate open scientific access. Our work demonstrates that expert-guided agents can effectively bridge the gap between general-purpose LLMs and high-stakes scientific domains, enabling scalable data discovery in geosciences.

The development of temporal extensions of Answer Set Programming (ASP) has led to the emergence of non-monotonic linear-time (TEL), dynamic (DEL), and metric (MEL) temporal equilibrium logics. However, the inherent rigidity of highly optimized ASP systems often hinders the rapid exploration and implementation of alternative logical designs. In this work, we propose a flexible meta-programming framework that operationalizes the semantics of varied temporal logics through a unified, declarative framework. Our approach extends standard ASP meta-programming by augmenting clingo's theory grammar with formal type specifications and nesting capabilities. To ensure semantic correctness, we introduce a transformation pipeline that protects nested modalities from stable-model-based simplifications during grounding. We demonstrate the extensibility of our framework by implementing meta-encodings for TEL, MEL, and DEL. We provide a comprehensive account of TEL and highlight the key features for managing the interval constraints of MEL and the Fischer-Ladner closure in DEL. Finally, we introduce the metasp system, a versatile tool that encapsulates this workflow.

Honeypots are decoy systems mimicking real system components designed to defend against cyber attacks. Recently, LLMs increasingly serve as simulation backbones for honeypots. They enable defenders to construct high-interaction honeypots with low system security risks. However, LLM-powered honeypot development lacks a unified evaluation framework. Most evaluations consist of measuring response similarity on fixed commands, manual testing, or real-world deployment. These methods are often not scalable for development, reproducible across evaluations, representative of practical attacks, or adaptable to various attacker and honeypot configurations. In this work, we bridge this gap and propose Honeyval, a comprehensive evaluation framework for LLM-powered HTTP honeypots. We address the limitations of prior evaluations by grounding the honeypots in 16 backend applications, using AI hacking agents as attackers, employing two control tasks to monitor agent and honeypot capabilities across customizations, and defining clear and verifiable exploit goals for the attacker. Using Honeyval, we conduct an extensive evaluation of recent cost-efficient LLMs as HTTP honeypots. Our experiments highlight the promise of LLM-powered honeypots; they lead to substantially longer interactions with the attacker than rule-based baseline honeypots and are far less frequently detected even by frontier models, all while, on average, preserving a running cost advantage against agentic attackers. Further, we experiment with different counter-offensive honeypots configurations, and observe unique trade-offs, such as longer interactions at the cost of increased detection.