Modeling long-term user interests with massive historical user behaviors enhances click-through rate (CTR) prediction performance in advertising and recommendation systems. Typically, a two-stage framework is widely adopted, where a general search unit (GSU) first retrieves top-$k$ relevant behaviors towards the target item, and an exact search unit (ESU) generates interest features via tailored attention. However, current target-centered GSU would ignore other latent user interests, leading to incomplete and biased interest features. Additionally, the matching-based retrieval process in GSUs depends on the pairwise similarity score between target item and each historical behavior, which not only becomes time-consuming for online services as user behaviors continue to grow, but also overlooks the interaction information among user behaviors. To combat these problems, we propose a \textbf{Gen}erative \textbf{L}ong-term user \textbf{I}nterest model named GenLI for CTR prediction. GenLI consists of an interest generation module (IGM), a behavior retrieval module (BRM), and an interest fusion module (IFM). The IGM generates multiple interest distributions to indicate different aspects of real-time user interests, which is target-independent and incorporates interaction information among behaviors, ensuring complete and diverse interest features. The BRM selects related behaviors via a simple lookup operation, reducing the time complexity for weighting each behavior to $O(1)$. Finally, the IFM uses delicate gating mechanisms to generate interest features. Based on the generation process, GenLI improves the diversity of user interests and avoids complex matching-based behavioral retrieval, achieving a better balance between accuracy and efficiency for CTR prediction.

Clinical application of high-resolution diffusion MRI is hindered by hardware limitations and prohibitive scan times, motivating computational super-resolution. This study investigates the efficacy of a feature-based loss function in preserving diffusion signal consistency in deep learning super-resolution. Using 7T data from the human connectome project to generate pairs of low- and high-resolution diffusion weighted images (DWI), we trained UNets for 2D super-resolution. Ablation and isolation studies evaluated different VGG16-layers for feature-based losses against an image-based L1 baseline. Deeper layers and combinations thereof resulted in grid-like artifacts in super-resolution DWIs, which persisted in diffusion parameters like quantitative and fractional anisotropy. No such artifacts were present when using the shallowest layer. Downstream analysis for this layer showed great consistency with the ground truth, even for 9-fold super-resolution. Image SNR and used VGG16-layer depths modulated artifact appearance and severity, mandating careful selection of contributing layers for application in and beyond diffusion MRI.

Security in cloud computing has become a major concern due to several factors such as layered cloud architectures, dynamic environments, and exposure to unseen or zero-day attacks. Moreover, intrusion detection systems (IDS) typically operate at specific layers and rely heavily on machine learning models, which often perform well in experimental settings but fail to sustain performance in real cloud deployments. In this work, we implement a confidence-aware multilevel intrusion detection system using reinforcement learning tailored for cloud environments. The system secures three distinct layers: network, host, and hypervisor. Machine learning models at each layer detect known attack patterns, while prediction confidence distinguishes reliable decisions from uncertain outcomes. Within the multi-gate flow, low-confidence events pass through a learned-threshold confidence gate (Gate-1), followed by a Chroma memory-matching gate (Gate-2), with unresolved events escalated to a large language model (LLM) for semantic analysis and explanation. Final attack promotion at Gate-3 uses calibrated LLM confidence or weighted-fusion fallback, while uncertain events are retained in a review bucket to avoid forced classification. Generated explanations and confirmed knowledge are stored in ChromaDB to support future analysis and retraining. The approach is first evaluated using static thresholds, establishing a baseline for comparison. Results show that the proposed system learns adaptive thresholds and reduces LLM escalation by 58.78%, lowering cost while maintaining strong performance (88.68% accuracy, 85.29% precision, 84.72% recall, 85.00% F1). The network and hypervisor layers achieve 98.02% and 97.08% accuracy, demonstrating a balanced and efficient detection system.

The modeling and simulation of infinite-dimensional Hamiltonian systems are central problems in mathematical physics and engineering, however they pose significant computational and structural challenges for standard data-driven architectures. In this work, we introduce the Symplectic Neural Operator, a neural operator architecture designed to preserve the symplectic structure intrinsic to Hamiltonian PDEs. We provide a theoretical characterization of their symplecticity and establish a rigorous long-term stability result based on the combination of symplectic structure preservation and learning accuracy. Numerical experiments on canonical Hamiltonian PDEs corroborate this theoretical result and show that SNOs exhibit improved energy behavior compared with non-structure-preserving neural operators.

We study the query complexity of obtaining a relative Fisher information guarantee for sampling from a log-smooth non-log-concave distribution; this is a sampling analog of finding an approximate stationary point in optimization. Our algorithm is based on the proximal sampler, which is an implicit discretization of the Langevin diffusion, and requires an implementation of the backward step known as the restricted Gaussian oracle (RGO). We show that by leveraging the recent results for log-concave sampling with high-accuracy guarantees in Rényi divergence, we can obtain an approximate RGO implementation that -- when used with the proximal sampler -- yields a complexity guarantee in relative Fisher information that inherits the same dimension dependence as log-concave sampling, and improves upon prior work for non-log-concave sampling. We also show a converse reduction that any improvement in the dimension dependence in relative Fisher information for non-log-concave sampling will yield an improved dimension dependence for high-accuracy log-concave sampling.

Conversational interfaces powered by large language models (LLMs) are widely used for ideation and analysis, yet their linear structure limits exploration of alternatives and management of long-running interactions. We present CanvasConvo, a conversational interface concept that transforms linear chat into a branching conversation tree embedded in a spatial canvas. CanvasConvo enables users to explore what-if scenarios by branching directly from conversational content, supporting parallel development of alternative directions. These branches are visualized on a canvas while remaining integrated with a familiar chat interface, allowing users to switch between linear and non-linear interaction. Features such as timeline-based navigation, automatic tagging and summarization, and context-aware controls (e.g., goals, reusable prompts) support structured interaction and continuity. We evaluated CanvasConvo in a 5-7 day field study with 24 participants. Our findings highlight how non-linear conversational structures support exploratory workflows and different interactions in LLM-based work.

This work extends a framework for predicting the performance of High-Performance Computing (HPC) workloads using Machine Learning (ML). A common limitation in performance modeling is the restricted number of hardware counters that can be collected simultaneously. To address this, we propose a heuristic-based methodology to merge execution traces from multiple runs, each instrumented with a different set of hardware counters. Our approach matches computation bursts across executions by analyzing MPI structure, timing, and communication patterns. This process enables the construction of a unified dataset that includes a wider set of hardware features without relying on multiplexing. The output is a new synthetic trace with all merged counters, which can be used both for HPC performance prediction and for conventional performance analysis. The methodology has been validated on MareNostrum5 machine with a range of kernels and real applications. Results show that the merged counters maintain acceptable accuracy depending on the application, and can be directly used to train ML models on a richer feature space without prior counter selection.

Stipple patterns, point sets whose local density tracks a target image, are traditionally produced by per-density iterative optimizers, which are slow, non-differentiable, and must be re-run from scratch for each new target. Learned alternatives have so far addressed only unconditional point generation; capacity-constrained, image-conditioned stippling has remained out of reach. We present the first diffusion-based sampler that simultaneously satisfies a learned local point-distribution prior and a continuous, image-defined capacity constraint at inference. The method is a ControlNet branch built on top of an optimal-transport-grid point-set diffusion baseline, conditioned on the target density map and a high-resolution image. Two design choices make the combination tractable: training and inference are restricted to the late-stage denoising regime, initialized from a density-weighted rejection sample, and the standard zero-convolution injection is replaced with a sigmoid-gated 1x1 projection that preserves the base model's blue-noise structure under hard density signals. A single trained checkpoint accepts arbitrary target densities at inference, generalizes to point budgets that were not seen during training, and produces stipples in time nearly independent of the output point count. On the Icons-50 benchmark, our learned sampler reaches parity with per-density-optimized baselines on every reported metric while remaining differentiable end-to-end.

Code agents increasingly help developers work with unfamiliar repositories, but every such task depends on a costly prerequisite: bootstrapping the repository into a usable development state. This process requires substantial trial-and-error exploration, yet the resulting knowledge--resolved dependencies, repair strategies--stays trapped in a single conversation, unavailable to future agents. We therefore formulate repository bootstrapping as a reusable startup knowledge problem and introduce BootstrapAgent, a multi-agent framework that distills the heuristics discovered during bootstrap exploration into a persistent, verifiable, agent-consumable .bootstrap contract. Through evidence extraction, structured planning, deterministic Docker-based verification, and trace-driven repair, BootstrapAgent generates a contract covering environment setup, diagnostic checks, minimal verification, and accumulated repair knowledge. We further propose warm repair with clean replay to accelerate iterative debugging without sacrificing cold-start reproducibility, and a delta repair with sanity check to prevent reward hacking. Experiments on three benchmarks show that BootstrapAgent achieves a 92.9% success rate, outperforming the baseline by over 10% while reducing downstream agent token usage by 25.9% and build time by 22.3%. Our code is available at https://github.com/Vossera/BootstrapAgent.

Recent advances in foundation models have enabled conversational agents that aim for sustained companionship rather than mere task completion. Yet most still remain unable to support natural, long-term companion-like interactions, resulting in experiences that feel episodic and inauthentic. We argue that current agents overlooked cross-temporal modeling of agents' social behaviors and internal emotions: generated behaviors rarely influence an agent's emotional state, and emotional states seldom shape subsequent behaviors. We present Cross-Temporal Emotion Modeling (CTEM), a framework that links long-term behavioral history to moment-to-moment emotional expression. CTEM establishes a closed loop where past experiences update an evolving emotional state; this state conditions immediate interactions; and user feedback continually revises both memory and emotional state, enabling reflection and anticipation. We instantiate CTEM as Auri, a companion agent on an instant-messaging platform, and report a 21-day in-the-wild study showing that CTEM shows improvements in perceived naturalness, coherence, and emotional harmony.

Multi-agent pathfinding (MAPF) under one-shot planning is a core component of warehouse automation, yet classical formulations typically assume four-connected 2D grids with unit-time moves in four directions. To fill reality gaps while still being trackable with discrete combinatorial search, this work proposes a more practical counterpart tailored to differential-drive AGVs. We term this multi-agent warehouse pathfinding (MAWPF), featured with four constraints: (i) agent actions are restricted to straight motion and in-place rotation; (ii) rotations require multi-step costs; (iii) acceleration and deceleration are considered, and; (iv) follower collisions are prohibited to prevent rear-end crashes. To solve MAWPF efficiently, we adapt representative suboptimal MAPF algorithms-PP, LNS2, PIBT, and LaCAM-and conduct comprehensive benchmarking. Our experiments reveal that PP and LNS2 struggle to solve instances with many agents, while PIBT-based approaches achieve preferable scalability with increased solution cost. We believe that these constitute an important step toward adapting classical gridworld MAPF to operational warehouse setups.

Proactive autoscaling for containerized workloads depends on knowing the provisioning delay, i.e., the time between a scaling decision and the moment new capacity is ready to serve traffic. In practice, this cold-start duration can vary substantially across environments and even across consecutive scale-out events. We present ADAPT (Adaptive Duration Approximation for Predictive Timing), an online EWMA estimator that tracks coldstart duration at runtime. ADAPT feeds a dynamic planning horizon, FH-OPT, into a Model Predictive Controller (MPC) that optimizes replica counts over a rolling window. Together, these components form a closed-loop proactive autoscaling design that adapts its lookahead based on measured provisioning delay. Evaluated across three policies (MPC+LSTM, MPC+Prophet, HPA) and six workload archetypes with five random seeds, MPC+LSTM achieves below 5% SLA violation on all workloads, compared with 7-19% for reactive HPA and up to 28.7% for MPC+Prophet on bimodal traffic.

Off-policy evaluation (OPE) estimates the value of a target treatment policy (e.g., a recommender system) using data collected by a different logging policy. It enables high-stakes experimentation without live deployment, yet in practice accuracy depends heavily on the logging policy used to collect data for computing the estimate. We study how to design logging policies that minimize OPE error for given target policies. We characterize a fundamental reward-coverage tradeoff: concentrating probability mass on high-reward actions reduces variance but risks missing signal on actions the target policy may take. We propose a unifying framework for logging policy design and derive optimal policies in canonical informational regimes where the target policy and reward distribution are (i) known, (ii) unknown, and (iii) partially known through priors or noisy estimates at logging time. Our results provide actionable guidance for firms choosing among multiple candidate recommendation systems. We demonstrate the importance of treatment selection when gathering data for OPE, and describe theoretically optimal approaches when this is a firm's primary objective. We also distill practical design principles for selecting logging policies when operational constraints prevent implementing the theoretical optimum.

Conformal prediction is often calibrated with a single pooled threshold, but this can hide cross-group heterogeneity in score distributions and distort group-wise coverage. We study this phenomenon through the population score distributions underlying split conformal calibration. First, we derive a conservation law and lower bound showing that pooled calibration incurs irreducible group-wise coverage distortion at a scale set by cross-group quantile heterogeneity. Second, we demonstrate that the two leading fairness definitions for conformal prediction, Equalized Coverage and Equalized Set Size, are fundamentally in tension. Third, we quantify the cost of moving between policies which treat groups separately or pool them. Experiments on synthetic and real data confirm the same bidirectional trade-off after finite-sample calibration. Our results show that, for the policy families studied here, calibration choice does not remove cross-group heterogeneity; it determines whether the resulting distortion appears in the coverage or size dimension, providing a principled lens for analyzing fairness-oriented calibration choices in practice.

Synthesising autonomous agents that can navigate uncertain environments while adhering to complex temporal constraints remains a fundamental challenge. While Linear Temporal Logic (LTL) provides a rigorous language for specifying such tasks, the inherent undecidability of qualitatively verifying LTL satisfaction in partially observable Markov decision processes renders quantitative synthesis difficult, especially when designing reliable reward signals for approximate solvers. In this paper, we bridge this gap with a novel, sound reward-shaping mechanism that dynamically generates belief-dependent rewards grounded in certified LTL satisfaction. By integrating this mechanism into an enhanced Monte Carlo Planning framework, we empower agents to navigate the `fog' of partial observability with a search process focused on maximising verifiable success. Our experiments demonstrate that this approach not only thrives in scenarios where existing solvers fail but also maintains effectiveness and scalability across diverse benchmark domains.

Many real-world phenomena are naturally modeled by graphs and networks. However, classical graph models are often limited to pairwise interactions and may not adequately capture the richer structures that arise in practice. Higher-order graph formalisms extend this framework by incorporating multiway, hierarchical, temporal, multilayer, recursive, and tensor-based interactions, thereby providing more expressive representations of complex systems. This book presents a comprehensive overview of mathematical notions that can be used to model higher-order networks. It surveys foundational concepts, extensional frameworks, and newly introduced formalisms, with an emphasis on their structural principles, relationships, and modeling roles. The aim is to provide a unified perspective that helps readers compare diverse higher-order network models and identify appropriate tools for theoretical study and practical applications. This book is Edition 2.0. It mainly includes the addition of several concepts, as well as corrections and improvements of typographical errors and explanations.

Continuous authentication in high-stakes digital environments requires datasets with fine-grained behavioral signals under realistic cognitive and motor demands. But current benchmarks are often limited by small scale, unimodal sensing or lack of synchronised environmental context. To address this gap, this paper introduces BEACON (Behavioral Engine for Authentication & Continuous Monitoring), a large-scale multimodal dataset that captures diverse skill tiers in competitive Valorant gameplay. BEACON contains approximately 430 GB of synchronised modality data (461 GB total on-disk including auxiliary Valorant configuration captures) from 79 sessions across 28 distinct players, estimated at 102.51 hours of active gameplay, including high-frequency mouse dynamics, keystroke events, network packet captures, screen recordings, hardware metadata, and in-game configuration context. BEACON leverages the high precision motor skills and high cognitive load that are inherent to tactical shooters, making it a rigorous stress test for the robustness of behavioral biometrics. The dataset allows for the study of continuous authentication, behavioral profiling, user drift and multimodal representation learning in a high-fidelity esports setting. The authors release the dataset and code on Hugging Face and GitHub to create a reproducible benchmark for evaluating next-generation behavioral fingerprinting and security models.

Reusing verification artefacts requires identifying structural and semantic similarities across programs and their specifications. In this paper, we focus on graph construction as a foundational step toward this goal. We present a pipeline that converts imperative programs and their annotations into typed, attributed graphs. Our experiments cover datasets including C with ACSL, Java with JML, and Dafny for C\#. The pipeline integrates abstract syntax tree parsing with semantic embeddings derived from models such as SentenceTransformer and CodeBERT. This enables the generation of graph representations that capture both structural relationships and semantic context. Our results show that consistent graph representations can be constructed across different languages and annotation styles. This work provides a practical basis for future steps in semantic enrichment and approximate graph matching for scalable verification artefact reuse.

As deep learning models are deployed on resource constrained edge platforms in autonomous driving systems, reli able knowledge of hardware behavior under resource degradation becomes an essential requirement. Therefore, we introduce a systematic characterization of CPU load, GPU utilization, RAM consumption, power draw, throughput, and thermal behaviour of TensorRT-optimized YOLOv10s, YOLOv11s and YOLO2026n pipelines running on NVIDIA Jetson Nano under a large-scale fault injection campaign targeting both lane-following and ob ject detection tasks. Faults are synthesized using a decoupled framework that leverages large language models (LLMs) and latent diffusion models (LDMs), based on original data from our JetBot platform data collection. Results show that across both tasks and both models the inference engines keep GPU occupancy stable, temperature rise under control, and power consumption within safe limits, while memory usage settles into a consistent release pattern after the initial warm-up phase. Object detection tends to show somewhat more variability in memory and thermal behavior, yet both tasks point to the same conclusion: the TensorRT pipelines hold up well even when the input data is heavily degraded. These findings offer a hardware-level view of model reliability that sits alongside, rather than against, the broader body of work focused on inference performance at the edge.

Understanding how the brain processes linguistic constructions is a central challenge in cognitive neuroscience and linguistics. Recent computational studies show that artificial neural language models spontaneously develop differentiated representations of Argument Structure Constructions (ASCs), generating predictions about when and how construction-level information emerges during processing. The present study tests these predictions in human neural activity using electroencephalography (EEG). Ten native English speakers listened to 200 synthetically generated sentences across four construction types (transitive, ditransitive, caused-motion, resultative) while neural responses were recorded. Analyses using time-frequency methods, feature extraction, and machine learning classification revealed construction-specific neural signatures emerging primarily at sentence-final positions, where argument structure becomes fully disambiguated, and most prominently in the alpha band. Pairwise classification showed reliable differentiation, especially between ditransitive and resultative constructions, while other pairs overlapped. Crucially, the temporal emergence and similarity structure of these effects mirror patterns in recurrent and transformer-based language models, where constructional representations arise during integrative processing stages. These findings support the view that linguistic constructions are neurally encoded as distinct form-meaning mappings, in line with Construction Grammar, and suggest convergence between biological and artificial systems on similar representational solutions. More broadly, this convergence is consistent with the idea that learning systems discover stable regions within an underlying representational landscape - recently termed a Platonic representational space - that constrains the emergence of efficient linguistic abstractions.

We present a framework in which a large language model (LLM) acts as an online adaptive controller for SIMP topology optimization, replacing conventional fixed-schedule continuation with real-time, state-conditioned parameter decisions. At every $k$-th iteration, the LLM receives a structured observation$-$current compliance, grayness index, stagnation counter, checkerboard measure, volume fraction, and budget consumption$-$and outputs numerical values for the penalization exponent $p$, projection sharpness $β$, filter radius $r_{\min}$, and move limit $δ$ via a Direct Numeric Control interface. A hard grayness gate prevents premature binarization, and a meta-optimization loop uses a second LLM pass to tune the agent's call frequency and gate threshold across runs. We benchmark the agent against four baselines$-$fixed (no-continuation), standard three-field continuation, an expert heuristic, and a schedule-only ablation$-$on three 2-D problems (cantilever, MBB beam, L-bracket) at $120\!\times\!60$ resolution and two 3-D problems (cantilever, MBB beam) at $40\!\times\!20\!\times\!10$ resolution, all run for 300 iterations. A standardized 40-iteration sharpening tail is applied from the best valid snapshot so that compliance differences reflect only the exploration phase. The LLM agent achieves the lowest final compliance on every benchmark: $-5.7\%$ to $-18.1\%$ relative to the fixed baseline, with all solutions fully binary. The schedule-only ablation underperforms the fixed baseline on two of three problems, confirming that the LLM's real-time intervention$-$not the schedule geometry$-$drives the gain. Code and reproduction scripts will be released upon publication.

Cross-domain Sequential Recommendation (CDSR) has been proposed to enrich user-item interactions by incorporating information from various domains. Despite current progress, the imbalance issue and transition issue hinder further development of CDSR. The former one presents a phenomenon that the interactions in one domain dominate the entire behavior, leading to difficulty in capturing the domain-specific features in the other domain. The latter points to the difficulty in capturing users' cross-domain preferences within the mixed interaction sequence, resulting in poor next-item prediction performance for specific domains. With world knowledge and powerful reasoning ability, Large Language Models (LLMs) partially alleviate the above issues by performing as a generator and an encoder. However, current LLMs-enhanced CDSR methods are still under exploration, which fail to recognize the irrelevant noise and rough profiling problems. Thus, to make peace with the aforementioned challenges, we proposed an LLMs Enhanced Cross-domain Sequential Recommendation with Dual-phase Training ({LLM-EDT}). To address the imbalance issue while introducing less irrelevant noise, we first propose the transferable item augmenter to adaptively generate possible cross-domain behaviors for users. Then, to alleviate the transition issue, we introduce a dual-phase training strategy to empower the domain-specific thread with a domain-shared background. As for the rough profiling problem, we devise a domain-aware profiling module to summarize the user's preference in each domain and adaptively aggregate them to generate comprehensive user profiles. The experiments on three public datasets validate the effectiveness of our proposed LLM-EDT. To ease reproducibility, we have released the detailed code online at {https://anonymous.4open.science/r/LLM-EDT-583F}.

We investigate the notion of sufficient explanation, and a sufficiency-degree as attribution score for database tuples in relation to query answering. We also investigate and exploit connections with database repairs as used for dealing with inconsistent databases; and with causality-based necessary explanations, obtaining new computational results. We show how to use answer-set programs to specify sufficient explanations and compute sufficiency-degrees.

Join ordering is the NP-hard problem of selecting the most efficient order in which to evaluate joins (conjunctive, binary operators) in a database query. Because query execution performance critically depends on this choice, join ordering lies at the core of query optimization. Traditional approaches cast this problem as a discrete combinatorial search over binary trees guided by a cost model, but they have trade-offs between effectiveness and efficiency. We show that when the cost model is differentiable, query plans can be continuously relaxed into a soft adjacency matrix that represents a superposition of plans. This continuous relaxation, combined with differentiable constraints that enforce plan validity, enables a gradient-based search for low-cost plans within this relaxed space. Using a Graph Neural Network as the cost model, we demonstrate that this gradient-based approach can find comparable and even lower-cost plans compared to traditional discrete search methods on two different graph datasets. Furthermore, we empirically show that the runtime of this approach scales better than discrete search algorithms. We believe this first step towards gradient-based join ordering can lead to more effective and efficient query optimizers in the future.

The separation of overlapping objects presents a significant challenge in scientific imaging. While deep learning segmentation-regression algorithms can predict pixel-wise intensities, they typically treat all regions equally rather than prioritizing overlap regions where attribution is most ambiguous. Recent advances in instance segmentation show that weighting regions of pixel overlap in training can improve segmentation boundary predictions in regions of overlap, but this idea has not yet been extended to segmentation regression. We address this with Overlap-Aware Segmentation of ImageS (OASIS): a new segmentation-regression framework with a weighted loss function designed to prioritize regions of object-overlap during training, enabling extraction of pixel intensities and topological features from heavily obscured objects. We demonstrate OASIS in the context of the MIGDAL experiment, which aims to directly image the Migdal effect--a rare process where electron emission is induced by nuclear scattering--in a low-pressure optical time projection chamber. This setting poses an extreme test case, as the target for reconstruction is a faint electron recoil track which is often heavily-buried within the order(s)-of-magnitude brighter nuclear recoil track. Compared to unweighted segmentation regression, we demonstrate OASIS's novel overlap region-targeted loss function weight to be the single most important training weight for improving intensity and topological reconstructions of the low-energy electron tracks that tend to be most dominated by pixel overlap. Averaging over eight training campaigns, we further show the addition of overlap-targeted weights to improve median intensity reconstruction errors from -41.1% to -13.3% for these low-energy electrons. These performance gains demonstrate OASIS as a generalizable methodology for recovering obscured signals in overlap-dominated regions.

Protein function is driven by cohesive substructures, such as catalytic triads, binding pockets, and structural motifs, that occupy only a small fraction of a protein's residues. Yet existing pipelines built on protein encoders do not model proteins at the substructure level, leaving the central biological question unanswered: which substructure of a protein is responsible for its function? We introduce BioBlobs, an encoder-agnostic, end-to-end differentiable framework that compresses a protein into a small set of cohesive substructures (blobs) and predicts function from these blobs alone, so that each blob corresponds to a candidate functional region. Across diverse protein function prediction tasks and multiple sequence- and structure-based encoders, BioBlobs matches or exceeds strong baselines while operating on only a small fraction of residues. The discovered blobs adapt their spatial scale to the task, ranging from local catalytic sites to entire structural domains. Trained only on protein-level labels, BioBlobs recovers experimentally annotated catalytic sites in the M-CSA database, demonstrating unsupervised functional substructure discovery and opening a path to large-scale functional site discovery across the unannotated proteome.

Quadratic programming is a workhorse of modern nonlinear optimization, control, and data science. Although regularized methods offer convergence guarantees under minimal assumptions on the problem data, they can exhibit the slow tail-convergence typical of first-order schemes, thus requiring many iterations to achieve high-accuracy solutions. Moreover, hyperparameter tuning significantly impacts the solver performance but how to find an appropriate parameter configuration remains an elusive research question. To address these issues, we explore how data-driven approaches can accelerate the solution process. Aiming at high-accuracy solutions, we focus on a regularized interior-point solver and carefully handle its two-loop flow and control parameters. We will show that reinforcement learning can make a significant contribution to facilitating the solver tuning and to speeding up the optimization process. Numerical experiments demonstrate that, after a lightweight training, the learned policy generalizes well to different problem classes with varying dimensions.

Spectral variability significantly impacts the accuracy and convergence of hyperspectral unmixing algorithms. Many methods address complex spectral variability; yet large-scale distortions to the scale of the observed pixel signatures due to topography, illumination, and shadowing remain a major challenge. These variations often degrade unmixing performance and complicate model fitting. Because of this, correcting these variations can offer significant advantages in real-world GIS applications. In this paper, we propose a novel preprocessing algorithm that corrects scale-induced spectral variability prior to unmixing. By estimating and correcting these distortions to the scale of the pixel signatures, the algorithm produces pixel signatures with minimal distortions in scale. Since these distortions in scale (which hinder the performance of many unmixing methods) are greatly minimized in the output provided by the proposed method, the abundance estimation of the unmixing algorithms is significantly improved. We present a rigorous mathematical framework to describe and correct for scale variability and provide extensive experimental validation of the proposed algorithm. Furthermore, the algorithm's impact is evaluated across a wide range of state-of-the-art unmixing methods on two synthetic and two real hyperspectral datasets. The proposed preprocessing step consistently improves the performance of these algorithms, achieving error reductions of around 50%, even for algorithms specifically designed to handle spectral variability. This demonstrates that scale correction acts as a complementary step, facilitating more accurate unmixing with existing methods. The algorithm's generality, consistent impact, and significant influence highlight its potential as a key component in practical hyperspectral unmixing pipelines. The implementation code will be made publicly available upon publication.

This paper introduces the Generality-Accuracy-Simplicity (GAS) framework to analyze how large language models (LLMs) are reshaping organizations and competitive strategy. We argue that viewing AI as a simple reduction in input costs overlooks two critical dynamics: (a) the inherent trade-offs among generality, accuracy, and simplicity, and (b) the redistribution of complexity across stakeholders. While LLMs appear to defy the traditional trade-off by offering high generality and accuracy through simple interfaces, this user-facing simplicity masks a significant shift of complexity to infrastructure, compliance, and specialized personnel. The GAS trade-off, therefore, does not disappear but is relocated from the user to the organization, creating new managerial challenges, particularly around accuracy in high-stakes applications. We contend that competitive advantage no longer stems from mere AI adoption, but from mastering this redistributed complexity through the design of abstraction layers, workflow alignment, and complementary expertise. This study advances AI strategy by clarifying how scalable cognition relocates complexity and redefines the conditions for technology integration.

We consider the problem of modeling the effects of perturbations like gene knockouts on measurements such as single-cell RNA counts. Given data for some perturbations, we aim to predict the distribution of measurements for new combinations of perturbations. To address this challenging extrapolation task, we posit that perturbations act additively in a suitable, unknown embedding space. We formulate the data-generating process as a latent variable model, in which perturbations amount to mean shifts in latent space and can be combined additively. We then prove that, given sufficiently diverse training perturbations, the representation and perturbation effects are identifiable up to orthogonal transformation and use this to derive extrapolation guarantees for unseen perturbations that can be expressed as linear combinations of seen ones. To estimate the model from data, we propose the perturbation distribution autoencoder (PDAE), which is trained by maximizing the distributional similarity between true and simulated perturbation distributions. The trained model can then be used to predict previously unseen perturbation distributions. In support of our theoretical results, we demonstrate through simulations that PDAE can accurately predict the effects of unseen but identifiable perturbations, and showcase the method on combinatorial gene perturbation data.